Projects in Awesome Lists tagged with epistasis

A curated list of projects in awesome lists tagged with epistasis .

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https://github.com/harmslab/epistasis

A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.

epistasis evolution genetics genotype-phenotype-maps high-order modeling nonlinear python

Last synced: 01 May 2025

https://github.com/lcrawlab/i-LDSC

Code and simulations using interaction-LD score regression

epistasis gwas gwas-summary-statistics gwas-tools heritability heritability-estimation ld-score-regression

Last synced: 03 Dec 2024

https://github.com/greenelab/model-free-data

Case-control genetics datasets evolved to be epistatic

biodata-mining dataset epistasis genetics moore-lab notebook open-data simulation snps supplement

Last synced: 02 Mar 2025

https://github.com/thomasweise/bbdob_w_model

The W-Model, a tunable Black-Box Discrete Optimization Benchmarking (BB-DOB) problem, implemented for the BB-DOB@GECCO Workshop.

benchmark benchmark-problem black-box-benchmarking combinatorial-optimization deterministic discrete-mathematics epistasis evolutionary-algorithm experiments fitness-landscape hill-climber local-search multi-objective multi-objectivity neutrality noise non-separability random-walk ruggedness

Last synced: 07 May 2025

https://github.com/epistasislab/pager

PAGER is an efficient genotype encoding strategy designed to improve the detection of non-additive genetic variation in complex trait association studies. PAGER dynamically encodes genetic variants by normalizing mean phenotypic differences between genotype classes.

additive-models dominance-analysis encoding epistasis genetic-inheritance genetic-interactions genetics genotype-to-phenotype gwas heterosis non-additive-effects qtl-analysis