Projects in Awesome Lists tagged with protein-folding
A curated list of projects in awesome lists tagged with protein-folding .
https://github.com/lucidrains/alphafold2
To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released
artificial-intelligence attention-mechanism deep-learning protein-folding
Last synced: 13 Apr 2025
https://github.com/PaddlePaddle/PaddleHelix
Bio-Computing Platform Featuring Large-Scale Representation Learning and Multi-Task Deep Learning “螺旋桨”生物计算工具集
biocomputing ddi deeplearning dti graph-networks machine-learning molecule-design ppi protein-design protein-docking protein-folding protein-structure-prediction representation-learning rna-structure-prediction self-supervised-learning
Last synced: 16 Nov 2024
https://github.com/paddlepaddle/paddlehelix
Bio-Computing Platform Featuring Large-Scale Representation Learning and Multi-Task Deep Learning “螺旋桨”生物计算工具集
biocomputing ddi deeplearning dti graph-networks machine-learning molecule-design ppi protein-design protein-docking protein-folding protein-structure-prediction representation-learning rna-structure-prediction self-supervised-learning
Last synced: 08 Apr 2025
https://github.com/hpcaitech/fastfold
Optimizing AlphaFold Training and Inference on GPU Clusters
alphafold2 cuda evoformer gpu habana-gaudi parallelism protein-folding protein-structure pytorch
Last synced: 13 Apr 2025
https://github.com/hpcaitech/FastFold
Optimizing AlphaFold Training and Inference on GPU Clusters
alphafold2 cuda evoformer gpu habana-gaudi parallelism protein-folding protein-structure pytorch
Last synced: 12 Nov 2024
https://github.com/rosettacommons/pyrosetta.notebooks
Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
dna google-colab jupyter-notebook protein-design protein-docking protein-folding protein-structure-prediction pyrosetta rna-structure-prediction rosetta
Last synced: 12 Apr 2025
https://github.com/lucidrains/equiformer-pytorch
Implementation of the Equiformer, SE3/E3 equivariant attention network that reaches new SOTA, and adopted for use by EquiFold for protein folding
artificial-intelligence attention-mechanisms deep-learning equivariance molecules protein-folding transformers
Last synced: 07 Apr 2025
https://github.com/lucidrains/invariant-point-attention
Implementation of Invariant Point Attention, used for coordinate refinement in the structure module of Alphafold2, as a standalone Pytorch module
artificial-intelligence deep-learning protein-folding
Last synced: 07 Apr 2025
https://github.com/lucidrains/tr-rosetta-pytorch
Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design
artificial-intelligence deep-learning protein-design protein-folding
Last synced: 14 Apr 2025
https://github.com/instadeepai/manyfold
🧬 ManyFold: An efficient and flexible library for training and validating protein folding models
bioinformatics deep-learning jax protein-folding protein-structure python research
Last synced: 30 Jan 2025
https://github.com/torchmd/torchmd-cg
Example to fit parameters and run CG simulations using TorchMD and Schnet
coarse-grained-molecular-dynamics machine-learning protein-folding pytorch
Last synced: 25 Jan 2025
https://github.com/lucidrains/triangle-multiplicative-module
Implementation of the Triangle Multiplicative module, used in Alphafold2 as an efficient way to mix rows or columns of a 2d feature map, as a standalone package for Pytorch
artificial-intelligence deep-learning protein-folding
Last synced: 09 Mar 2025
https://github.com/instadeepai/framedipt
FrameDiPT: an SE(3) diffusion model for protein structure inpainting
alphafold2 diffusion-models generative-model inpainting loop-design protein-folding protein-structure tcr
Last synced: 30 Jan 2025
https://github.com/aws-samples/aws-rosettafold
Infrastructure template and Jupyter notebooks for running RoseTTAFold on AWS Batch.
alphafold2 aws aws-batch deep-learning hpc protein-folding rosettafold
Last synced: 21 Nov 2024
https://github.com/astrabert/proteinviz
Your open-source alternative to AlphaFold3🚀
ai bioinformatics biology huggingface-spaces open-source protein-folding structure-prediction
Last synced: 12 Apr 2025
https://github.com/jhrcook/proof-of-concept-alphafold
A proof-of-concept for using AlphaFold with new amino acid sequences (this may change to a full project in the future).
alphafold bioinformatics jupyterlab protein-folding python3 tensorflow
Last synced: 03 Mar 2025
https://github.com/joerivandervelde/vkgl-protein-folding
Protein folding on VKGL data using FoldX and AlphaFold2
alphafold2 diagnostics genome protein-folding variant-analysis
Last synced: 03 Mar 2025
