Projects in Awesome Lists tagged with variation-graphs
A curated list of projects in awesome lists tagged with variation-graphs .
https://github.com/at-cg/PanAligner
Long read aligner for cyclic and acyclic pangenome graphs
pangenome read-alignment variation-graphs
Last synced: 10 May 2025
https://github.com/dubssieg/pancat
Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions
pangenome pangenome-graph pangenomics variation-graph variation-graphs
Last synced: 10 May 2025
https://github.com/pangenome/spodgi
RDF and SPARQL ideas to build on top of [odgi](https://github.com/pangenome/odgi)
gfa odgi rdflib sparql variation-graphs
Last synced: 08 Apr 2026
https://github.com/dubssieg/gfagraphs
Library to parse, edit and handle in memory GFA graphs
pangenome pangenome-graph pangenomics variation-graph variation-graphs
Last synced: 10 May 2025
https://github.com/jorgeavilacartes/panricci
Alignment of Pangenome Graphs with Ricci Flow
pangenome-graph pangenomics ricci-curvature ricci-flow riemannian-geometry variation-graphs
Last synced: 28 May 2026
https://github.com/dubssieg/rs-pancat-compare
Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.
distance distance-calculation distance-measures graph-distance pangenome pangenome-graph pangenomics variation-graph variation-graphs
Last synced: 19 Jul 2025