Projects in Awesome Lists tagged with variation-graph
A curated list of projects in awesome lists tagged with variation-graph .
https://github.com/vgteam/vg
tools for working with genome variation graphs
dna genome-graph genomics graph variation-graph
Last synced: 14 May 2025
https://github.com/MoMI-G/MoMI-G
Modular Multi-scale Integrated Genome Graph Browser
genome-browser genome-graph graph-genome-browser structural-variants variation-graph
Last synced: 10 May 2025
https://github.com/dubssieg/pancat
Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions
pangenome pangenome-graph pangenomics variation-graph variation-graphs
Last synced: 10 May 2025
https://github.com/algbio/GraphChainer
An accurate aligner of long reads to a variation graph, based on co-linear chaining
long-reads pangenomics read-aligners variation-graph
Last synced: 10 May 2025
https://github.com/edawson/svaha2
Linear-time, low-memory construction of variation graphs
genome-graph genomics gfa structural-variation variation-graph
Last synced: 24 Apr 2025
https://github.com/w-gao/pgv
A web-based, interactive pangenome visualization tool
bioinformatics genomics genomics-visualization variation-graph
Last synced: 10 May 2025
https://github.com/edawson/svaha
Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]
Last synced: 24 Apr 2025
https://github.com/jervenbolleman/handlegraph4jrdf
Handlegraph RDF writers in java for working with variation graph genome data.
biohackeu20 bioinformatics dna faldo rdf variation-graph vg
Last synced: 02 Apr 2025
https://github.com/dubssieg/gfagraphs
Library to parse, edit and handle in memory GFA graphs
pangenome pangenome-graph pangenomics variation-graph variation-graphs
Last synced: 10 May 2025
https://github.com/dubssieg/rs-pancat-compare
Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.
distance distance-calculation distance-measures graph-distance pangenome pangenome-graph pangenomics variation-graph variation-graphs
Last synced: 26 Nov 2024