Projects in Awesome Lists tagged with structural-variants
A curated list of projects in awesome lists tagged with structural-variants .
https://github.com/broadinstitute/gatk-sv
A structural variation pipeline for short-read sequencing
bioinformatics genomics structural-variants structural-variation
Last synced: 12 Apr 2025
https://github.com/MoMI-G/MoMI-G
Modular Multi-scale Integrated Genome Graph Browser
genome-browser genome-graph graph-genome-browser structural-variants variation-graph
Last synced: 10 May 2025
https://github.com/gatb/mindthegap
MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a local assembly tool.
bioinformatics debruijn-graph gatb genomics structural-variants
Last synced: 15 Oct 2025
https://github.com/bcgsc/pavfinder
:mag: Post Assembly Variants Finder
assembly bioinformatics gene-fusions rna-seq splice-variants structural-variants
Last synced: 07 May 2025
https://github.com/wglab/phenosv
PhenoSV: Interpretable phenotype-aware model for the prioritization of genes affected by structural variants.
phenotyping structural-variants transformer variant-interpretation
Last synced: 17 Jan 2026
https://github.com/tobiasrausch/sv
Structural variant calling tutorial using long-reads.
delly genomics genomics-analysis structural-variants structural-variation
Last synced: 07 Mar 2026
https://github.com/sydney-informatics-hub/germline-structuralv-nf
Germline structural variant calling pipeline for short read WGS datasets
annotsv australian-biocommons bam bioinformatics dsl2 genomics germline-variant-calling manta nextflow ngs pipeline smoove structural-variants survivor tiddit workflow
Last synced: 02 Jan 2026
https://github.com/jlmaier12/proactive
Detect elevations and gaps in read coverage on metagenome contigs or assembled genomes
bacteriophage metagenomics mobile-genetic-elements pattern-matching prophages read-mapping sequencing-coverage structural-variants transposable-elements
Last synced: 22 Feb 2026
https://github.com/leahkemp/test_sv_callers
Testing structural variant (SV) callers for illumina germline whole genome sequence (WGS) data (human).
illumina structural-variants whole-genome-sequencing
Last synced: 29 Oct 2025
https://github.com/fabio-cunial/smaht_experiments
Studying the effect of long-read coverage on somatic structural variant calling from tissues
long-read-sequencing nanopore-sequencing pacbio-sequencing somatic-variants structural-variants
Last synced: 18 Feb 2026
