Projects in Awesome Lists tagged with mobile-genetic-elements
A curated list of projects in awesome lists tagged with mobile-genetic-elements .
https://github.com/fmalmeida/bacannot
Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.
annotation antimicrobial-genes-annotation barrnap genome-analysis genome-browser genomic-islands-prediction insertion-sequences ko-annotation methylation-annotation mobile-genetic-elements nextflow phigaro pipeline prophage-sequences-prediction prophages reproducible-research rgi rrna-prediction virulence-factor virulence-genes
Last synced: 05 May 2025
https://github.com/beiko-lab/arete
AMR/VF LGT focused bacterial genomics analysis workflow
antimicrobial-genes-annotation antimicrobial-resistance bacterial-genome-analysis genomic-islands-prediction lateral-gene-transfer metagenomics mobile-genetic-elements nextflow pangenomics pipeline poppunk recombination reproducible-research rgi virulence-factor
Last synced: 11 Mar 2026
https://github.com/jordiabante/biodive
A reference-free statistical approach to diversity-generating & mobile genetic element discovery
bioinformatics crispr-cas9 microbial-genomics microbiome-analysis mobile-genetic-elements
Last synced: 14 Jan 2026
https://github.com/jlmaier12/proactive
Detect elevations and gaps in read coverage on metagenome contigs or assembled genomes
bacteriophage metagenomics mobile-genetic-elements pattern-matching prophages read-mapping sequencing-coverage structural-variants transposable-elements
Last synced: 22 Feb 2026
