Projects in Awesome Lists by WGLab
A curated list of projects in awesome lists by WGLab .
https://github.com/wglab/doc-annovar
Documentation for the ANNOVAR software
Last synced: 17 Jan 2026
https://github.com/wglab/intervar
A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline
Last synced: 17 Jan 2026
https://github.com/wglab/nanocaller
Variant calling tool for long-read sequencing data
Last synced: 17 Jan 2026
https://github.com/wglab/biocluster
Tutorial on building a computing cluster for bioinformatics
Last synced: 17 Jan 2026
https://github.com/wglab/bioformer
Bioformer: an efficient BERT model for biomedical text mining
bert-model biomedical-nlp natural-language-processing natural-language-understanding nlp
Last synced: 17 Jan 2026
https://github.com/wglab/phen2gene
Phenotype driven gene prioritization for HPO
Last synced: 17 Jan 2026
https://github.com/wglab/cancervar
Clinical interpretation of somatic mutations in cancer
Last synced: 17 Jan 2026
https://github.com/wglab/deepmod2
DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads
deep-learning methylation nanopore-sequencing
Last synced: 17 Jan 2026
https://github.com/wglab/nanomod
NanoMod: a computational tool to detect DNA modifications using Nanopore long-read sequencing data
Last synced: 17 Jan 2026
https://github.com/WGLab/NanoMod
NanoMod: a computational tool to detect DNA modifications using Nanopore long-read sequencing data
Last synced: 06 May 2025
https://github.com/wglab/seqmule
Automated human exome/genome variants detection from FASTQ files
Last synced: 17 Jan 2026
https://github.com/wglab/nanorepeat
NanoRepeat: fast and accurate analysis of Short Tandem Repeats (STRs) from Oxford Nanopore sequencing data
bioinformatics genome-analysis genomics nanopore-sequencing pacbio-sequencing repeat-detection sequencing short-tandem-repeats
Last synced: 17 Jan 2026
https://github.com/wglab/longgf
A computational algorithm and software tool for fast and accurate detection of gene fusion by long-read transcriptome sequencing
Last synced: 17 Jan 2026
https://github.com/wglab/scotch
Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single-cell RNA sequencing
Last synced: 02 Mar 2026
https://github.com/wglab/phenosv
PhenoSV: Interpretable phenotype-aware model for the prioritization of genes affected by structural variants.
phenotyping structural-variants transformer variant-interpretation
Last synced: 17 Jan 2026
https://github.com/wglab/gdp
Group lasso based Deep Neural Network for Cancer Prognosis
Last synced: 17 Jan 2026
https://github.com/wglab/icages
iCAGES (integrated CAncer GEnome Score) is an effective tool for prioritizing cancer driver genes for a patient
Last synced: 17 Jan 2026
https://github.com/wglab/mutformer
A transformer model to predict pathogenic mutations
Last synced: 17 Jan 2026
https://github.com/wglab/ampbinner
A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data
Last synced: 17 Jan 2026
https://github.com/wglab/contextsv
An alignment-based, generalized structural variant caller for long-read sequencing/mapping data
Last synced: 17 Jan 2026
https://github.com/wglab/gene-fusion-detection-pipeline-lrs
The Gene Fusion (GF) Detection Pipeline is comprehensive bioinformatics workflow designed for Oxford Nanopore long-read sequencing data.
Last synced: 17 Jan 2026
https://github.com/wglab/phenogpt2
PhenoGPT2 is an advanced phenotype recognition model, leveraging the robust capabilities of large language models.
Last synced: 17 Jan 2026
https://github.com/wglab/icages-server
the iCAGES server running on Ruby on Rails
Last synced: 17 Jan 2026
https://github.com/wglab/line-expression-lrs
Bioinformatics pipeline for the identification and quantification of active, full-length Long INterspersed Elements (LINEs)
Last synced: 17 Jan 2026
https://github.com/wglab/termviewer
Repository for NLP project filtering medical notes
Last synced: 17 Jan 2026
https://github.com/wglab/raredai
RareDAI is an advanced LLM technique, fine-tuned on LLama 3.1 models, designed to support genetic counselors and patients in choosing the most appropriate molecular genetic tests, such as gene panels or WES/WGS, through clear and comprehensive explanations.
Last synced: 17 Jan 2026
https://github.com/wglab/enlight
Web server for epigenetic annotation of genetic variants
Last synced: 17 Jan 2026
https://github.com/wglab/infuse
Software for detecting gene fusions and exon-skippings from long read sequencing
Last synced: 17 Jan 2026
https://github.com/wglab/wglab.github.io
Distribution website for software tools developed by WGLab
Last synced: 17 Jan 2026
https://github.com/wglab/llamadx
LlamaDx is an advanced LLM technique, pretrained on LLama 3.2 models, designed to providing some predictions and medical knowledges for doctors, nurses and patients through clear and comprehensive explanations. It is an AI chatbot where the users can ask question and provide relevant information for disease diagnosis.
Last synced: 17 Jan 2026