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Projects in Awesome Lists by Biomedical-Imaging-Group

A curated list of projects in awesome lists by Biomedical-Imaging-Group .

https://github.com/biomedical-imaging-group/globalbioim

A unifying Matlab framework for the development of reconstruction algorithms (solving inverse problems) in computational imaging

image-processing image-reconstruction inverse-problems linear-algebra matlab-library

Last synced: 05 Nov 2024

https://github.com/biomedical-imaging-group/deconvolutionlab2

Java (ImageJ/Fiji) software package for 3D deconvolution microscopy

3d algorithms deconvolution images-plugins microscopy

Last synced: 05 Nov 2024

https://github.com/biomedical-imaging-group/orientationj

ImageJ's plugin for directional analysis in images: color-coded analysis, distribution of orientation, vector field, keypoint detection

directionality imagej-plugins orientation structure-tensor vector-field

Last synced: 05 Nov 2024

https://github.com/biomedical-imaging-group/psfgenerator

A Java software package to generate realistic 3D microscope Point-Spread Function (PSF)

Last synced: 05 Nov 2024

https://github.com/biomedical-imaging-group/interactive-kit

A toolkit for interactive visualization of signal and image processing on Jupyter Notebooks.

education epfl image-processing ipywidgets jupyter-notebook matplotlib python visualization

Last synced: 09 Nov 2024

https://github.com/biomedical-imaging-group/image-access

A class for the didactic implementation of image-processing algorithms in JavaScript.

education epfl image-processing javascript jupyter-notebook

Last synced: 11 Oct 2024

https://github.com/biomedical-imaging-group/steer-n-detect

ImageJ plugin - Steerable Template Detector

Last synced: 05 Nov 2024

https://github.com/biomedical-imaging-group/continuous_frc_smlm

Computes the Fourier-ring correlation (FRC) in the continuous domain for single molecule localization microscopy (SMLM)

Last synced: 05 Nov 2024

https://github.com/biomedical-imaging-group/edf-extended-depth-of-field

An ImageJ plugin for stack focusing. Implementation of several algorithms form max-variance to max-wavelets.

Last synced: 05 Nov 2024

https://github.com/biomedical-imaging-group/multi-kernel-regression-gtv-

The accompanying codes of the paper "Multi-Kernel Regression with Sparsity Constraint"

Last synced: 05 Nov 2024

https://github.com/biomedical-imaging-group/cryoem-joint-refinement

Joint angular refinement and reconstruction algorithm for single-particle Cryo-EM.

Last synced: 05 Nov 2024

https://github.com/biomedical-imaging-group/singlecellclassifier

Single Cell Classifier (SCC) is an ImageJ/Fiji plugin that aims to classify cells based on features related to their nuclei and their neighbors.

Last synced: 05 Nov 2024

https://github.com/biomedical-imaging-group/interactive-cell-lineage-tracer

ImageJ plugin to track and mesure cells. Chiara Toniolo, Daniel Sage

Last synced: 05 Nov 2024

https://github.com/biomedical-imaging-group/splineops

Spline signal processing in N-D with support for GPU computing

Last synced: 05 Nov 2024

https://github.com/biomedical-imaging-group/deepsplines

A learnable linear spline module (PyTorch)

Last synced: 05 Nov 2024