Projects in Awesome Lists by LTLA
A curated list of projects in awesome lists by LTLA .
https://github.com/ltla/singlecellthoughts
Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.
Last synced: 01 Feb 2026
https://github.com/ltla/basilisk
Clone of the Bioconductor repository for the basilisk package.
Last synced: 11 Oct 2025
https://github.com/ltla/scrnaseq
Clone of the Bioconductor repository for the scRNAseq package.
Last synced: 10 Apr 2025
https://github.com/ltla/batchelor
Clone of the Bioconductor repository for the batchelor package.
batch-correction bioconductor-package human-cell-atlas single-cell-rna-seq
Last synced: 15 Oct 2025
https://github.com/ltla/cppirlba
A C++ port of the IRLBA algorithm, based on the C code in the R package.
Last synced: 10 Apr 2025
https://github.com/ltla/tiledbarray
Clone of the Bioconductor repository for the TileDBArray package.
Last synced: 12 Oct 2025
https://github.com/ltla/pseudocount2018
Some thoughts on choosing an appropriate pseudo-count for log-transformation of scRNA-seq counts.
Last synced: 02 Aug 2025
https://github.com/ltla/scuttle
Clone of the Bioconductor repository for the scuttle package.
Last synced: 10 Apr 2025
https://github.com/ltla/cppweightedlowess
A standalone C++ implementation of limma::weightedLowess.
Last synced: 10 Apr 2025
https://github.com/ltla/csawusersguide
Clone of the Bioconductor repository for the csawUsersGuide workflow.
Last synced: 10 Apr 2025
https://github.com/ltla/hvgdetection2018
Justification for the variance modelling and HVG detection methods in scran.
Last synced: 24 Jan 2026
https://github.com/ltla/biocsingular
Clone of the Bioconductor repository for the BiocSingular package.
bioconductor-package human-cell-atlas singular-value-decomposition
Last synced: 10 Apr 2025
https://github.com/ltla/cppkmeans
C++ port of R's Hartigan-Wong implementation
Last synced: 10 Apr 2025
https://github.com/ltla/summarizedexperiments.jl
Julia implementation of Bioconductor's SummarizedExperiment class
Last synced: 08 Oct 2025
https://github.com/ltla/artsc
Single-cell-related art, which may or may not be scientifically useful. But hey, it's pretty.
Last synced: 10 Apr 2025
https://github.com/ltla/pcselection2018
Some comments on how to determine the number of PCs to retain.
Last synced: 19 Jan 2026
https://github.com/ltla/rebook
Clone of the Bioconductor repository for the rebook package.
Last synced: 10 Apr 2025
https://github.com/ltla/matrixeval2017
Evaluating access and memory usage of different matrix types
Last synced: 18 Jan 2026
https://github.com/ltla/csaw
Clone of the Bioconductor repository for the csaw package.
Last synced: 27 Jul 2025
https://github.com/ltla/acceptable-anime-gifs
A curated set of GIFs that are reasonably SFW, primarily used to power annoying Slackbots.
Last synced: 18 Jan 2026
https://github.com/ltla/gesel-feedstock
Generate pre-built gesel indices for client-side gene set search.
Last synced: 05 Apr 2025
https://github.com/ltla/multiassayexperiments.jl
Julia implementation of Bioconductor's MultiAssayExperiment.
Last synced: 19 Mar 2026
https://github.com/ltla/independentfilter2015
Some work detailing the independence of the NB mean as a filter statistic.
Last synced: 05 Apr 2025
https://github.com/ltla/trojanbookbuilder
Sneak books onto the Bioconductor build system with a trojan package.
Last synced: 05 Apr 2025
https://github.com/ltla/subpar
Substitutable parallelization for C++ libraries
Last synced: 12 Jul 2025
https://github.com/ltla/droplettestfiles
Clone of the Bioconductor repository for the DropletTestFiles package.
Last synced: 09 Sep 2025
https://github.com/ltla/bluster
Clone of the Bioconductor repository for the bluster package.
Last synced: 05 Sep 2025
https://github.com/ltla/interactionset
Clone of the Bioconductor repository for the InteractionSet package, see https://bioconductor.org/packages/devel/bioc/html/InteractionSet.html for the official development version.
Last synced: 08 Oct 2025
https://github.com/ltla/metapod
Clone of the Bioconductor repository for the metapod package.
Last synced: 02 Feb 2026
https://github.com/ltla/wasmarrays.js
Memory-management wrapper around arrays on the Wasm heap.
Last synced: 05 Apr 2025
https://github.com/ltla/anime-slack-cronjob
Hosts GitHub Actions that posts anime GIFs to my various slack channels.
Last synced: 30 Jan 2026
https://github.com/ltla/gesel-app
A demonstration UI for the gesel library.
Last synced: 14 Sep 2025
https://github.com/ltla/oddsandends
Miscellaneous code fragments that don't belong anywhere else.
Last synced: 10 Jan 2026
https://github.com/ltla/travelsaroundtheworld
Aaron's tips, tricks and general reminders for travelling around the world. Or at least to civilized places with internet connectivity.
Last synced: 18 Jan 2026
https://github.com/ltla/residualmatrix
Clone of the Bioconductor repository for the ResidualMatrix package.
Last synced: 10 Apr 2025
https://github.com/ltla/chipseqdb
Clone of the Bioconductor repository for the chipseqDB workflow.
Last synced: 18 Jan 2026
https://github.com/ltla/chipseqthoughts
Assorted thoughts on ChIP-seq practices and software, see https://ltla.github.io/ChIPSeqThoughts for the compiled version.
Last synced: 13 Feb 2026
https://github.com/ltla/assorthead
Assorted header-only libraries for Bioconductor
Last synced: 08 Apr 2026
https://github.com/ltla/genomicfeaturevectors.jl
Julia implementation of Bioconductor's GenomicRanges(List) infrastructure.
Last synced: 19 Jan 2026
https://github.com/ltla/cruktools
Assorted scripts for running server jobs at CRUK CI
Last synced: 05 Apr 2025
https://github.com/ltla/actions-anime-gif-slackbot
Post anime GIFs to Slack as a GitHub Action. What better way to annoy your co-workers?
Last synced: 03 Oct 2025
https://github.com/ltla/hdf5arrays.jl
Julia implementation of Bioconductor's HDF5Array class.
Last synced: 19 Feb 2026
https://github.com/ltla/basilisk.utils
Clone of the Bioconductor repository for the basilisk.utils package.
Last synced: 02 Aug 2025
https://github.com/ltla/debuggingspectra
Various files for debugging the Spectra library.
Last synced: 10 Oct 2025
https://github.com/ltla/acceptable-anime-gifs-api
REST API for serving anime GIFs on a Cloudflare Worker
Last synced: 05 Apr 2025
https://github.com/ltla/bumpymatrix
Clone of the Bioconductor repository for the BumpyMatrix package.
Last synced: 11 Feb 2026
https://github.com/ltla/main2master
Convert your main branch back to its rightful name.
Last synced: 05 Apr 2025
https://github.com/ltla/bioconductor.js
Javascript implementations of common Bioconductor classes
Last synced: 05 Apr 2025
https://github.com/ltla/r-virtual-library
Fork of wch's r-source that uses a virtual library.
Last synced: 05 Apr 2025
https://github.com/ltla/scaledmatrix
Clone of the Bioconductor repository for the ScaledMatrix package.
Last synced: 10 Apr 2025
https://github.com/ltla/tscan
Clone of the Bioconductor repository for the TSCAN package.
Last synced: 10 Apr 2025
https://github.com/ltla/simple-cors-proxy
Simple CORS proxy for GETting in web apps
Last synced: 05 Apr 2025
https://github.com/ltla/rtsnetestsuite
Tests the Rtsne package against the original bhtsne implementation.
Last synced: 05 Apr 2025
https://github.com/ltla/kana.parser
Parsing, validating and (possibly) creating state files for kana.
Last synced: 19 Jul 2025
https://github.com/ltla/h5wasm-cmake-demo
Demonstration of how to pull in h5wasm's static libraries via CMake
Last synced: 05 Apr 2025
https://github.com/ltla/repertoireutils
Utilities for analyzing repertoire sequencing data, to be used in the OSCA book.
Last synced: 05 Apr 2025
https://github.com/ltla/trajectoryutils
Clone of the Bioconductor repository for the TrajectoryUtils package.
Last synced: 05 Apr 2025
https://github.com/ltla/umap-fun
Demonstration of browser-side compute until Jay gets off his damn ass and gets back to work.
Last synced: 05 Apr 2025
https://github.com/ltla/h5wasm-pthreads-mre
A minimum reproducible example of my problem.
Last synced: 31 Jan 2026
https://github.com/ltla/oknn2018
Code for performance testing of the kmknn package at https://github.com/LTLA/kmknn.
Last synced: 05 Apr 2025
https://github.com/ltla/son.of.basilisk
Test package for the SPB to see if basilisk works.
Last synced: 05 Apr 2025
https://github.com/ltla/acceptable-anime-gifs-validator
Validator for the acceptable anime GIF database
Last synced: 05 Apr 2025
https://github.com/ltla/biociset2016
Technical note for the InteractionSet package
Last synced: 05 Apr 2025
https://github.com/ltla/chipseqdbdata
Clone of the Bioconductor repository for the chipseqDBData package, see https://bioconductor.org/packages/devel/data/experiment/html/chipseqDBData.html for the official development version.
Last synced: 05 Apr 2025
https://github.com/ltla/flmam
Test code for fitting linear models to any matrix representation.
Last synced: 12 Jun 2025
https://github.com/ltla/fuyuko
Inspect CMake dependencies from parsing FetchContent calls
Last synced: 05 Apr 2025
https://github.com/ltla/wehitools
Assorted scripts for running server jobs at WEHI
Last synced: 05 Apr 2025
https://github.com/ltla/win32matrixtest
Tests Matrix::tcrossprod numerical precision on Windows 32-bit
Last synced: 13 Jul 2025
https://github.com/ltla/singlepp-references
Reference datasets for automated cell type annotation with singlepp.
Last synced: 20 Jul 2025
https://github.com/ltla/runtimelinksviar
Proof of concept for run-time linking of C++ libraries via R
Last synced: 05 Apr 2025
https://github.com/ltla/rainbowbiocsticker
A rainbow-ized Bioconductor sticker.
Last synced: 06 Feb 2026
https://github.com/ltla/dualindexedmatrix
A DelayedArray backend that supports fast simultaneous row and column access.
Last synced: 24 Jul 2025
https://github.com/ltla/biocworkcache
Testing the feasibility of knitr caching for Bioconductor workflows
Last synced: 24 Jul 2025
https://github.com/ltla/powerit
Lightweight C++ library for power iterations
Last synced: 10 Mar 2026
https://github.com/ltla/basilisk-manuscript
Manuscript for the basilisk package
Last synced: 18 Jan 2026
https://github.com/ltla/chipseqdbresults
Compiled reference results for the chipseqDB workflow at https://github.com/LTLA/chipseqDB.
Last synced: 04 Feb 2026
https://github.com/ltla/mumosa
Clone of the Bioconductor repository for the mumosa package.
Last synced: 04 Feb 2026
https://github.com/ltla/cloudflare-d1-test
Testing ground for Cloudflare D1
Last synced: 04 Jul 2025
https://github.com/ltla/matrix
Fork of https://r-forge.r-project.org/scm/?group_id=61
Last synced: 06 Oct 2025
https://github.com/ltla/bumpymatrix-manuscript
Manuscript describing the BumpyMatrix class.
Last synced: 18 Jan 2026