Projects in Awesome Lists tagged with batch-correction
A curated list of projects in awesome lists tagged with batch-correction .
https://github.com/theislab/scarches
Reference mapping for single-cell genomics
batch-correction data-integration deep-learning human-cell-atlas multimodal-deep-learning multiomics rna-seq-analysis scrna-seq single-cell single-cell-genomics
Last synced: 11 Oct 2025
https://github.com/kharchenkolab/conos
R package for the joint analysis of multiple single-cell RNA-seq datasets
batch-correction scrna-seq single-cell-rna-seq
Last synced: 21 Feb 2026
https://github.com/mangiolalaboratory/sccomp
Mixed-effect model to test differences in cell type proportions from single-cell data, in R
batch-correction bayesian composition cytof differential-proportion microbiome multilevel proportions r-package random-effects single-cell unwanted-variation
Last synced: 20 Oct 2025
https://github.com/MangiolaLaboratory/sccomp
Testing differences in cell type proportions from single-cell data.
batch-correction bayesian composition cytof differential-proportion microbiome multilevel proportions r-package random-effects single-cell unwanted-variation
Last synced: 07 Oct 2025
https://github.com/ltla/batchelor
Clone of the Bioconductor repository for the batchelor package.
batch-correction bioconductor-package human-cell-atlas single-cell-rna-seq
Last synced: 15 Oct 2025
https://github.com/multiomics-analytics-group/abaco
Batch Effect Correction framework for metagenomic data
batch-correction bioinformatics-software metagenomics microbiome python
Last synced: 31 Aug 2025
https://github.com/genepattern/seurat.integratedata
GenePattern module which implements the batch correction algorithm within Seurat.
batch-correction data-integration genepattern-module seurat seurat-objects
Last synced: 20 Feb 2026
https://github.com/stef1949/harmonizenn
Adversarial autoencoder for bulk RNA‑seq batch effect correction that removes batch signal while preserving biological variation, outputting a corrected logCPM matrix and latent embeddings with optional supervised label preservation.
autoencoder batch-correction neural-network python r rna-seq
Last synced: 30 Aug 2025
