Projects in Awesome Lists by MASILab
A curated list of projects in awesome lists by MASILab .
https://github.com/masilab/synb0-disco
Distortion correction of diffusion weighted MRI without reverse phase-encoding scans or field-maps
deep-learning diffusion-mri distortion-correction
Last synced: 16 Jan 2026
https://github.com/masilab/prequal
An automated pipeline for integrated preprocessing and quality assurance of diffusion weighted MRI images
assurance diffusion mri preprocessing quality
Last synced: 16 Jan 2026
https://github.com/masilab/synbold-disco
Synthetic BOLD images for distortion correction of fMRI without additional calibration scans
bold deep-learning distortion-correction fmri
Last synced: 16 Jan 2026
https://github.com/masilab/cornn_tractography
Convolutional-recurrent neural networks approximate diffusion tractography from T1-weighted MRI and associated anatomical context
convolutional-recurrent-neural-network deep-learning diffusion-mri t1-weighted-mri tractography
Last synced: 16 Jan 2026
https://github.com/masilab/registration_tutorial
Step by step instructions for body/thorax registration
Last synced: 16 Jan 2026
https://github.com/MASILab/registration_tutorial
Step by step instructions for body/thorax registration
Last synced: 09 May 2025
https://github.com/masilab/tractem
Support code for Whole Brain Protocol for Tractography with Empirical MRI (TractEM)
Last synced: 16 Jan 2026
https://github.com/masilab/strudel
Streamline Tractography Utilities for Deep Learning
deep-learning diffusion-mri recurrent-neural-networks tractography tutorial
Last synced: 16 Jan 2026
https://github.com/masilab/braid
BRain Age Identification from Diffusion MRI (BRAID)
computer-vision deep-learning mri
Last synced: 16 Jan 2026
https://github.com/masilab/vss_fmri
Vasculature-informed spatial smoothing for fMRI
Last synced: 16 Jan 2026
https://github.com/masilab/on_segmentation
Segmentation of the Optic Nerve in MRI
Last synced: 16 Jan 2026
https://github.com/masilab/dss_fmri_atlas
Diffusion-informed spatial smoothing fMRI atlas
Last synced: 16 Jan 2026
https://github.com/masilab/atlastodiffusionreg
singularity to register an atlas to the diffusion space of a subject
Last synced: 16 Jan 2026
https://github.com/masilab/beyond_fa_microstruct_baseline
Microstructural baseline for BeyondFA challenge
Last synced: 16 Jan 2026
https://github.com/masilab/spinal_cord_microstructure
The Diffusion microstructure python toolkit (dmipy) offers compartment modelling as modules for different combinations. Thus allowing for different combinations to be formed. This repository contains code for multiple combinations utilizing the modules
Last synced: 16 Jan 2026
https://github.com/masilab/inhale_exhale_ct
Repo for harmonization of reconstruction kernels on inspiratory, expiratory scans
Last synced: 16 Jan 2026
https://github.com/masilab/michael_kim_overview
Overview of all projects by Michael Kim (kimm58)
Last synced: 16 Jan 2026
https://github.com/masilab/randomwalkslidingwindow
Alleviating tiling effect by random walk sliding window in high-resolution histological whole slide image synthesis.
Last synced: 16 Jan 2026
https://github.com/masilab/montageqa
A simple python GUI for labeling montages of nifti images
Last synced: 16 Jan 2026
https://github.com/masilab/model_of_models_dwmri
Bottleneck models for learning across different compartment and orientation models in DW-MRI
Last synced: 16 Jan 2026
https://github.com/masilab/deep_fixel
DeepFixel: Deep learning-based identification of crossing fiber bundle elements
Last synced: 16 Jan 2026
https://github.com/masilab/flair_tract
FLAIR Tractography without subject-specific anatomical context.
Last synced: 16 Jan 2026
https://github.com/masilab/masimrs
2D PRESS MRSI Processing for Philips Enhanced DICOM and Siemens DICOM data with LCModel
image-processing mr-spectroscopy mri
Last synced: 16 Jan 2026
https://github.com/masilab/nerforganrecon
How to run code to reconstuct an organ surface from an .mp4 video
Last synced: 16 Jan 2026
https://github.com/masilab/rotnet-fa-baseline
Baseline algorithm for Beyond FA Challenge
Last synced: 16 Jan 2026
https://github.com/masilab/beyondfa_mlp
Architecture for BFA evaluation method for teams to test their approaches
Last synced: 16 Jan 2026
https://github.com/masilab/anatomyconstrainedmultipathgan
Segmentation guided CT kernel harmonization using MultipathcycleGAN and TotalSegmentator
Last synced: 16 Jan 2026
https://github.com/masilab/nucleus_and_cell_classification_on_he
Classify nuclei/cells on intestinal H&E into 14 different classes
Last synced: 16 Jan 2026
https://github.com/masilab/tractometry_flow_spider
Tractometry Flow Spider from XNAT
Last synced: 16 Jan 2026