Projects in Awesome Lists by Qile0317
A curated list of projects in awesome lists by Qile0317 .
https://github.com/qile0317/apackoftheclones
Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of clonal expansion at a single cell resolution, by representing expanded clones as differently sized circles.
clonal-analysis immune-repertoire immune-system r scrna-seq scrnaseq seurat single-cell single-cell-genomics
Last synced: 10 Apr 2025
https://github.com/qile0317/kmergma.jl
A seed-based homology searching tool
bioinformatics genomics homology homology-search kmer kmer-counting
Last synced: 12 Mar 2025
https://github.com/qile0317/chainable.jl
Simplified function chaining in Julia.
Last synced: 12 May 2025
https://github.com/qile0317/fastutils
R package for readable, and fast utility functions.
r scientific-computing utilities utility
Last synced: 10 Apr 2025
https://github.com/qile0317/sofocompbio22
Updates and analysis scripts for my SoFo project.
Last synced: 12 Mar 2025
https://github.com/qile0317/bacteria-classifier-cnn
A resnet50 bacterial genus/strain classifier from the dibas dataset.
bacteria-classification cnn deep-learning deep-neural-networks fastai image-classification
Last synced: 12 Mar 2025
https://github.com/qile0317/ucsd-biopy
scripts I developed for the UCSD bioinformatics course
Last synced: 12 Mar 2025
https://github.com/qile0317/osmosis-lr
School Osmosis lab result analysis via Linear Regression
bioinformatics linear-regression osmosis
Last synced: 12 Mar 2025
https://github.com/qile0317/scipdata
A data package for testing the APackOfTheClones package. Contains public 10X Genomics datasets.
Last synced: 12 Mar 2025
https://github.com/qile0317/espm50ac-fp-fa24
ESPM50AC final project at UC Berkeley, fall 2024
Last synced: 12 Mar 2025
https://github.com/qile0317/simplepdfmerger
A simple pdf merging desktop application
Last synced: 12 Mar 2025
https://github.com/qile0317/freqtrie.jl
Implementation of a modified Trie datastructure where duplicate letters posses a "count" that increments when a character matches the current node.
Last synced: 12 Mar 2025
https://github.com/qile0317/simple-todo
A work in progress python to do list application with minimalist design
Last synced: 12 Mar 2025
https://github.com/qile0317/kmergma-suppplemental-material
Repository for analysis scripts, data, and general supplemental information for Utställningen Ungaforskare finals 2023
Last synced: 12 Mar 2025
https://github.com/qile0317/screpertoire1
Legacy version of the scRepertoire R package
Last synced: 11 Apr 2025
https://github.com/qile0317/apackoftheclonesappendix
Supplemental materials repository for the R package APackOfTheClones and its companion Journal Of Open Source Software paper.
Last synced: 12 Mar 2025