Projects in Awesome Lists by SCIInstitute
A curated list of projects in awesome lists by SCIInstitute .
https://github.com/sciinstitute/scirun
SCIRun is a Problem Solving Environment, for modeling, simulation and visualization of scientific problems. This is version 5, the upgraded version of SCIRun v4.
biomedical boost-libraries c-plus-plus cmake dataflow-programming forward-problem inverse-problems linear-systems mesh-generation open-source python qt5 qt6 scientific-computations scientific-computing scientific-visualization visualization
Last synced: 09 Apr 2025
https://github.com/sciinstitute/seg3d
Seg3D is a free volume segmentation and processing tool developed by the NIH Center for Integrative Biomedical Computing at the University of Utah Scientific Computing and Imaging (SCI) Institute.
Last synced: 08 May 2025
https://github.com/sciinstitute/imagevis3d
An out-of-core volumetric rendering application.
Last synced: 09 Apr 2025
https://github.com/sciinstitute/sci-solver_fem
SCI-Solver_FEM is a C++/CUDA library written to solve an FEM linear system. It is designed to solve the FEM system quickly by using GPU hardware.
Last synced: 09 Apr 2025
https://github.com/sciinstitute/cleaver
A MultiMaterial Tetrahedral Meshing Library and Application
Last synced: 09 Apr 2025
https://github.com/sciinstitute/fluorender
FluoRender is an interactive rendering tool for confocal microscopy data visualization.
Last synced: 09 Apr 2025
https://github.com/sciinstitute/sci-solver_peridynamic
SCI-Solver_Peridynamic is a C++/CUDA library written to simulate a fracture behavior in a particle cloud model. It uses GPU hardware to provide a fast solution.
Last synced: 09 Apr 2025
https://github.com/sciinstitute/structuredeikonal
CUDA implementation of FIM (Fast Iterative Method) for Eikonal equations on Structured Volumes
Last synced: 09 Apr 2025
https://github.com/sciinstitute/sci-solver_eikonal
SCI-Solver_Eikonal is a C++/CUDA library written to solve the Eikonal equation on triangular and tetrahedral meshes. It uses the fast iterative method (FIM) to solve efficiently, and uses GPU hardware.
Last synced: 09 Apr 2025
https://github.com/sciinstitute/tuvok
GPU-accelerated, out-of-core volume rendering library.
Last synced: 09 Apr 2025
https://github.com/sciinstitute/sci-solver_level-set
SCI-Solver_Level-Set is a C++/CUDA library written to solve a system of level set equations on unstructured meshes. It is designed to solve the equations quickly by using GPU hardware.
Last synced: 09 Apr 2025
https://github.com/sciinstitute/shapeworksstudio
Shapeworks Studio is a free shape analysis tool.
Last synced: 24 Nov 2024
https://github.com/sciinstitute/diffractionclassification
An open service to classify diffraction patterns
Last synced: 09 Apr 2025
https://github.com/sciinstitute/implicitfunction
Code to construct implicit RBF surfaces.
Last synced: 09 Apr 2025
https://github.com/sciinstitute/brainstimulator
BrainStimulator is a software package to simulate (transcranial) brain stimulation and is implemented in the scientific problem solving environment that SCIRun offers (version > 5.0).
Last synced: 09 Apr 2025
https://github.com/sciinstitute/dspacex
dSpaceX Visualization Library and Tool
Last synced: 09 Apr 2025
https://github.com/sciinstitute/itkcleaver
Wrapper for Cleaver to use as an ITK filter
c-plus-plus itk itk-module python
Last synced: 09 Apr 2025
https://github.com/sciinstitute/pfeifer
Signal processing toolbox for cardiac potential recordings.
ecg-imaging ecg-signal electrocardiography signal-processing
Last synced: 09 Apr 2025
https://github.com/sciinstitute/uncertainsci-trame-demos
web app with demos of UncertainSCI
computer-simulation-and-modeling python uncertainty-quantification webapp
Last synced: 17 Mar 2025
https://github.com/sciinstitute/developertools
This repo contains scripts that download and report download stats on other github repos.
Last synced: 17 Mar 2025
https://github.com/sciinstitute/cleaver.pages
This project hosts and serves the doxygen-generated C++ API documentation for Cleaver.
Last synced: 17 Mar 2025
https://github.com/sciinstitute/sci-solver_dcsr
GPU Implementation of a Dynamic Compressed Sparse-Row Matrix Format
Last synced: 17 Mar 2025
https://github.com/sciinstitute/sci-solver_eikonal-2d
This is a deprecated repo. It has been merged into https://github.com/SCIInstitute/SCI-Solver_Eikonal
Last synced: 17 Mar 2025
https://github.com/sciinstitute/vis18
Probabilistic Asymptotic Decider for Topological Ambiguity Resolution in Level-Set Extraction for Uncertain 2D Data
Last synced: 17 Mar 2025
https://github.com/sciinstitute/shapeworks-post
[DEPRECATED] Post-processing for ShapeWorks (moved directly to SCIInstitute/ShapeWorks)
Last synced: 17 Mar 2025
https://github.com/sciinstitute/shapeworks.pages
This is the documentation repository for Shapeworks Studio for developers and users
Last synced: 17 Mar 2025
https://github.com/sciinstitute/map3d-thirdparty
map3d thirdparty libraries
Last synced: 17 Mar 2025
https://github.com/sciinstitute/publicationsystemhackathon
Collaborative effort to build a better publication tracking and recording system
Last synced: 10 Mar 2025
https://github.com/sciinstitute/dbspipeline
simulation pipeline for DBS stimulation and RNS stimulation
Last synced: 10 Mar 2025
https://github.com/sciinstitute/spireregression
Contains regression data for Spire.
Last synced: 17 Mar 2025
https://github.com/sciinstitute/shapeworks-prep
[DEPRECATED] Pre-prossessing pipeline for Shapeworks (moved directly to SCIInstitute/ShapeWorks)
Last synced: 17 Mar 2025
https://github.com/sciinstitute/uncertainsci-web-demo
This is a demonstration of UncertainSCI deployed on the web
Last synced: 17 Mar 2025
https://github.com/sciinstitute/fluorender3
New multi-platform UI and structure for FluoRender.
Last synced: 17 Mar 2025
https://github.com/sciinstitute/cmp
The Computational Molecular Phenotyping application was created for Bryan Jones and Robert Marc. It implements an interface for clustering and classification of CMP data.
Last synced: 17 Mar 2025
https://github.com/sciinstitute/slicer-cleaverextension
Cleaver Extension for Slicer4
Last synced: 17 Mar 2025
https://github.com/sciinstitute/shapeworks-run
[DEPRECATED] Shapeworks Core pipeline (moved directly to SCIInstitute/ShapeWorks)
Last synced: 17 Mar 2025
https://github.com/sciinstitute/multiscaleviewer
Viewer for Multiple Volumes of Varying Scale
Last synced: 17 Mar 2025
https://github.com/sciinstitute/cip-coop
repo for CIP CoOP information and webpages
Last synced: 17 Mar 2025
https://github.com/sciinstitute/scirun-exchange
SCIRun user files collaboration
Last synced: 17 Mar 2025
https://github.com/sciinstitute/implicitmodelexample
Example for using the implicit model tool in Seg3D to make a surface from points.
Last synced: 17 Mar 2025
https://github.com/sciinstitute/vtkcleaver
Wrapper for Cleaver to use as a VTK filter
c-plus-plus python vtk vtk-module
Last synced: 17 Mar 2025