Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
Projects in Awesome Lists by audy
A curated list of projects in awesome lists by audy .
https://github.com/audy/domain-name-generator
generat.es clev.er sho.rt doma.in nam.es
Last synced: 02 Oct 2024
https://github.com/audy/bioinformatics-hacks
Scripts for miscelleneous bioinformatics tasks
Last synced: 02 Oct 2024
https://github.com/audy/stitch
Overlap assembler of paired-end DNA sequences generated by Illumina
Last synced: 02 Oct 2024
https://github.com/audy/smalldata
Small(-ish) datasets for fun and teaching
Last synced: 02 Oct 2024
https://github.com/audy/miseq-16s-pipeline
HPC pipeline for overlapping V4 16S rRNA reads generated on Illumina MiSeq
Last synced: 02 Oct 2024
https://github.com/audy/lederhosen
User-friendly tool to quickly go from 16S rRNA sequence data to an OTU matrix
Last synced: 02 Oct 2024
https://github.com/audy/tbl2asn-forever
Use tbl2asn forever by pretending that it's still 2019
Last synced: 02 Oct 2024
https://github.com/audy/evernote-git-backup
Automatically backup Evernote notes to HTML files and track using Git
Last synced: 02 Oct 2024
https://github.com/audy/make-rmarkdown
Make + RMarkdown for minimally replicable scientific computing.
Last synced: 02 Oct 2024
https://github.com/audy/ncbi-taxonomy-bot
Bot that toots when NCBI updates their taxonomy database
bioinformatics bots ncbi taxonomy
Last synced: 02 Oct 2024
https://github.com/audy/barcode-generator
Generate nucleotide sequences for multiplexed sequencing aka "barcoding" given some constraints.
Last synced: 02 Oct 2024
https://github.com/audy/dna
A biological sequence file (fasta, fastq, qseq) parser for Ruby
bioinformatics dna parser ruby
Last synced: 02 Oct 2024
https://github.com/audy/tree-of-life
:deciduous_tree: API for NCBI taxonomic lineages
Last synced: 02 Oct 2024
https://github.com/audy/craigslist-twitter-bot
Craigslist-scraping Twitter bot
Last synced: 02 Oct 2024
https://github.com/audy/genome-explorer
:microscope: Genome Browser for Bacteria
bioinformatics genomics rails-application
Last synced: 26 Sep 2024
https://github.com/audy/docker-sciruby-notebook
SciRuby + IRuby notebook in a Docker container
Last synced: 02 Oct 2024
https://github.com/audy/poster-session-bootstrap
Create academic style posters by editing markdown files. Focus on content instead of layout.
Last synced: 02 Oct 2024
https://github.com/audy/bioinformatics
annotated list of bioinformatics tools I used
Last synced: 02 Oct 2024
https://github.com/audy/telegram-bot
:robot: :phone: it's a me! telegram bot!
Last synced: 02 Oct 2024
https://github.com/audy/banana
A tool for handling multiplexed 454 and Illumina generated sequence data
Last synced: 02 Oct 2024
https://github.com/audy/downloads
:floppy_disk: Happy file downloading for Python
Last synced: 02 Oct 2024
https://github.com/audy/wrapperer
A universal wrapper for command line programs in R
Last synced: 02 Oct 2024
https://github.com/audy/vagrant-torque
Run a single machine torque cluster inside of a Vagrant VM.
Last synced: 02 Oct 2024
https://github.com/audy/sqlalchemy-sandbox
Thing I made to get good at SQLAlchemy
Last synced: 02 Oct 2024
https://github.com/audy/hiseq-16s-pipeline
Process Illumina 16S amplicons on the really big computer at the University of Florida
Last synced: 02 Oct 2024
https://github.com/audy/galaxy-illumina-16s
Ion Torrent 16S rRNA amplicon pipeline for Galaxy
Last synced: 02 Oct 2024
https://github.com/audy/greenhouse-monitor
Code and specs for a remote, always-on (3G), temperature and humidity sensor running on a Raspberry Pi
Last synced: 02 Oct 2024
https://github.com/audy/crosswords
:newspaper: :coffee: crossword puzzle generator
Last synced: 02 Oct 2024
https://github.com/audy/bio-xl
Tools for dealing with large (> memory) collections of nucleotide sequences
Last synced: 02 Oct 2024
https://github.com/audy/hdf5-dna
Examples and experiments of using HDF5 and h5py with biological sequence data
Last synced: 02 Oct 2024
https://github.com/audy/bio-dat
Examples/experiments of using dat with bioinformatics (sequence) data.
Last synced: 02 Oct 2024
https://github.com/audy/pass-app
A simple, web-based front-end for password-store
Last synced: 02 Oct 2024
https://github.com/audy/berkeley-bowl-soups
Scraping and analyzing the daily soup offerings at Berkeley Bowl
Last synced: 02 Oct 2024
https://github.com/audy/pangea
taxonomy-dependent short read 16S rRNA classifier
Last synced: 02 Oct 2024
https://github.com/audy/rrna_validation
Final Project for ZOO6927 - Methods of Phylogenetic Inference
Last synced: 02 Oct 2024
https://github.com/audy/import-sequences
Horrifying hack for importing raw DNA sequencing reads into a standard format
Last synced: 02 Oct 2024
https://github.com/audy/pangea3
OTU clustering pipeline based on CLC Assembly Cell
Last synced: 02 Oct 2024
https://github.com/audy/self.check
Keep track of self-reported data about yourself.
Last synced: 02 Oct 2024
https://github.com/audy/python-science-skeleton
IPython data science project skeleton
Last synced: 02 Oct 2024
https://github.com/audy/sequence-storage
web app for managing lots of sequence data
Last synced: 02 Oct 2024
https://github.com/audy/miniblast
The usual seed and extend search algorithm implemented in Ruby.
Last synced: 02 Oct 2024
https://github.com/audy/supreme-happiness
Reformatter/prettifier for multiple languages
Last synced: 02 Oct 2024
https://github.com/audy/falafel-renderer
Scripts to generate https://falafel.space map
Last synced: 02 Oct 2024
https://github.com/audy/vagrant-rstudio
Yet another Vagrantfile for RStudio
Last synced: 02 Oct 2024
https://github.com/audy/genome-pipeline
Bacterial genome processing filters and utilities based on HTML-Pipeline
Last synced: 02 Oct 2024
https://github.com/audy/sequence-manipulation-suite
fork of the sequence-manipulation-suite [with Docker]
Last synced: 02 Oct 2024
https://github.com/audy/phone-blast
source code for the original BLAST server
Last synced: 02 Oct 2024
https://github.com/audy/snakemake-hello-world
Minimal working map-reduce pattern in Snakemake (with containerization)
Last synced: 02 Oct 2024
https://github.com/audy/nearproteins
:mag: :book: Amino Acids Database with Fuzzy Querying
Last synced: 02 Oct 2024
https://github.com/audy/nextflow-demo-barebones
Nextflow pipeline w/ modules sans nf-core
Last synced: 02 Oct 2024
https://github.com/audy/phyloseq-time
Functions for analyzing microbiome data across a time variable - A Phyloseq extension
Last synced: 02 Oct 2024
https://github.com/audy/docker-password-store
Run password-store and GnuPG inside of a Docker container
Last synced: 02 Oct 2024
https://github.com/audy/phony
prints combinations of words that can be generated by the same numbers on a dial-pad and "predictive text"
Last synced: 02 Oct 2024
https://github.com/audy/richardson-2014
Analysis code for the DIPP microbiome study
Last synced: 02 Oct 2024
https://github.com/audy/docker-homely-mutt
:envelope: :dog: The Homely Mutt by @sjl in Docker form
Last synced: 02 Oct 2024