Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
Projects in Awesome Lists by constantinpape
A curated list of projects in awesome lists by constantinpape .
https://github.com/constantinpape/z5
Lightweight C++ and Python interface for datasets in zarr and N5 format
chunked-storage cloud h5py multidimensional-arrays multidimensional-data n5 storage zarr
Last synced: 15 Nov 2024
https://github.com/constantinpape/torch-em
Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.
Last synced: 16 Nov 2024
https://github.com/constantinpape/elf
Utils and convenience functions for large-scale bio-image analysis.
3d-segmentation affine-transformation bio-image-analysis image-analysis lifted-multicut microscopy-images multicut mutex-watershed segmentation
Last synced: 17 Nov 2024
https://github.com/constantinpape/cluster_tools
Distributed segmentation for bio-image-analysis
3d-segmentation bio-image-analysis cluster-computing connectomics lifted-multicut microscopy-images multicut mutex-watershed segmentation watershed
Last synced: 17 Nov 2024
https://github.com/constantinpape/pybdv
python tools for BigDataViewer
3d-viewer bdv bigdataviewer image-pyramid
Last synced: 27 Oct 2024
https://github.com/constantinpape/heimdall
Python based viewer for large mulit-dimensional datasets.
Last synced: 27 Oct 2024
https://github.com/constantinpape/affogato
Affinity based segmentation algorithms and tools
Last synced: 27 Oct 2024
https://github.com/constantinpape/rf_benchmarks
Benchmarking Random Forests for ilastik.
Last synced: 05 Nov 2024
https://github.com/constantinpape/dl-teaching-resources
Collection of teaching material for deep learning for (biomedical) image analysis
Last synced: 27 Oct 2024
https://github.com/constantinpape/machine_learning
Repo for machine learning project.
Last synced: 05 Nov 2024
https://github.com/constantinpape/dalle-mini-poster
Create posters from dalle-mini / craiyon screenshots
Last synced: 05 Nov 2024
https://github.com/constantinpape/skeletor
Tools and wrappers for skeletonization.
connectomics skeletonization teasar
Last synced: 05 Nov 2024
https://github.com/constantinpape/stuff_master
Misc. programed during master / neuro segmentation
Last synced: 05 Nov 2024
https://github.com/constantinpape/minitorch
Lightweight torch wrapper for bio-medical segmentation
Last synced: 05 Nov 2024
https://github.com/constantinpape/deep-micro-val
Evaluating segmentation methods for common cell segmentation problems
Last synced: 05 Nov 2024
https://github.com/constantinpape/z5py-benchmarks
ASV benchmark suite for z5 / z5py
Last synced: 05 Nov 2024
https://github.com/constantinpape/pyopengm
Modern python wrapper for opengm
Last synced: 05 Nov 2024
https://github.com/constantinpape/pyaffine
Affine transformations in python (prototype)
Last synced: 05 Nov 2024
https://github.com/constantinpape/cgal-test
Simple Installer for CGAL Skeleton Example
Last synced: 05 Nov 2024
https://github.com/constantinpape/quantile_tests
Comparing calculation of quantiles with boost and vigra accumulators
Last synced: 05 Nov 2024
https://github.com/constantinpape/paintera_tools
Tools for generating, curating and merging paintera datasets
Last synced: 05 Nov 2024
https://github.com/constantinpape/fastpy
Turorial on speeding up python for image processing
Last synced: 05 Nov 2024
https://github.com/constantinpape/conda_tests
Reporting conda bug with invalid dependencies in run requirements
Last synced: 05 Nov 2024
https://github.com/constantinpape/butler
Templates and implementations of TCP-Server based services for distributed tasks
Last synced: 05 Nov 2024
https://github.com/constantinpape/cremi_synapse_metric
Testing the cremi synapse metric
Last synced: 05 Nov 2024
https://github.com/constantinpape/nifty-rag-wrapper
Wrapping the nifty rag to ilastik
Last synced: 05 Nov 2024
https://github.com/constantinpape/escargot
Graph algorithms in c++ and python
Last synced: 05 Nov 2024
https://github.com/constantinpape/marray_benchmarks
Benchmarking c++ multiarrays
Last synced: 05 Nov 2024
https://github.com/constantinpape/custom_malis
Malis C++ implementation with accessible custom neighborhoods
Last synced: 05 Nov 2024
https://github.com/constantinpape/constantinpape.github.io
Another blog - why not?
Last synced: 05 Nov 2024
https://github.com/constantinpape/mulastik
Ilastik mutex watershed prototype
Last synced: 05 Nov 2024
https://github.com/constantinpape/vis_tools
Visualization helper for graph-based segmentation
Last synced: 05 Nov 2024
https://github.com/constantinpape/xtveyor
Minimal example fior xtensor build with appveyor.
Last synced: 05 Nov 2024
https://github.com/constantinpape/defect_svm
Kernel SVM for defect detection in TEM data.
Last synced: 05 Nov 2024
https://github.com/constantinpape/affinities
Implementation of different affinity computations
Last synced: 05 Nov 2024
https://github.com/constantinpape/watersheds
Test different watersheds on distance transform.
Last synced: 05 Nov 2024
https://github.com/constantinpape/deep-holodeck
Lightweight dashbord for monitoring deep learning experiments.
Last synced: 05 Nov 2024
https://github.com/constantinpape/pybigcat
Bigcat format converter from python
Last synced: 05 Nov 2024
https://github.com/constantinpape/xt_util
Functions for nd data processing with xtensor
Last synced: 05 Nov 2024
https://github.com/constantinpape/neuroworks
Neural network babysteps with tensorflow
Last synced: 05 Nov 2024