https://github.com/etetoolkit/ete

Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.

phylogenetics phylogenomic python tree-structure treeview visualization

Last synced: 29 Apr 2025

https://github.com/etetoolkit/cookbook

Last synced: 10 Apr 2025

https://github.com/etetoolkit/course

Last synced: 10 Apr 2025

https://github.com/etetoolkit/treematcher

Search flexible patterns within tree structures using regular expression like syntax.

Last synced: 16 Jun 2025

https://github.com/etetoolkit/pmodeltest

Python implementation of modeltest/prottest supporting proteins and nucleotides (can be run in parallel).

Last synced: 10 Apr 2025

https://github.com/etetoolkit/webplugin

Experiments for a new webplugin module (examples for phylotastic.org project )

Last synced: 10 Apr 2025

https://github.com/etetoolkit/ext_apps

A compilation of external software used by ETE

Last synced: 10 Apr 2025

https://github.com/etetoolkit/etetoolkit_gsoc

Last synced: 22 Jan 2026

https://github.com/etetoolkit/ete4

Last synced: 10 Apr 2025

https://github.com/etetoolkit/ete-gallery

Examples of use of the ETE Toolkit

Last synced: 08 Oct 2025

https://github.com/etetoolkit/ete4_apps

command line applications based on ete4

Last synced: 21 Jan 2026

https://github.com/etetoolkit/ete-data

Data files to use with the ETE Toolkit

Last synced: 16 Oct 2025

https://github.com/etetoolkit/ete_toolchain

Last synced: 05 Feb 2026

https://github.com/etetoolkit/logicali

Last synced: 10 Apr 2025