Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
Projects in Awesome Lists by mrc-ide
A curated list of projects in awesome lists by mrc-ide .
https://github.com/mrc-ide/polici_africa_south_america
Shiny app to show African and South American YF coverage
Last synced: 24 Dec 2024
https://github.com/mrc-ide/shiny90
Shiny tool for the first 90 HIV model (https://github.com/mrc-ide/first90)
Last synced: 24 Dec 2024
https://github.com/mrc-ide/outbreakteachr
Demonstration of analysis associated to "paper outbreak" teaching practical
Last synced: 24 Dec 2024
https://github.com/mrc-ide/pika
Lightweight package for estimating the optimal lag and rolling correlation by grouping variable between two time series
Last synced: 24 Dec 2024
https://github.com/mrc-ide/covid_vaccine_allocation
Within-country prioritisation, global allocation, and public health impact of a vaccine against SARS-CoV-2: A modelling study
Last synced: 24 Dec 2024
https://github.com/mrc-ide/flodia
🌊🌊 Compartmental model flow diagrams in base R
Last synced: 24 Dec 2024
https://github.com/mrc-ide/global-lmic-reports-staging
Daily updated LMIC COVID-19 reports (Staging)
Last synced: 24 Dec 2024
https://github.com/mrc-ide/beers
:beers: :package: Beers Interpolation and Subdivision (my first R package)
demography interpolation subdivision
Last synced: 24 Dec 2024
https://github.com/mrc-ide/buildr
:construction_worker::package: Build packages on request
Last synced: 24 Dec 2024
https://github.com/mrc-ide/specio
:rainbow: Spectrum IO for EPP model for HIV epidemic estimates
Last synced: 24 Dec 2024
https://github.com/mrc-ide/msvalidation
Long running validation vignettes for the malariasimulation package
Last synced: 24 Dec 2024
https://github.com/mrc-ide/alphaepi
Epidemiological analysis of HIV population cohort ata
Last synced: 24 Dec 2024
https://github.com/mrc-ide/tb-elim
Models for the Tuberculosis elimination framework
Last synced: 24 Dec 2024
https://github.com/mrc-ide/safir3
A version of safir with individual infectiousness
Last synced: 24 Dec 2024
https://github.com/mrc-ide/drpower
Sample size calculation and power analysis for drug- and diagnostic resistance studies
Last synced: 24 Dec 2024
https://github.com/mrc-ide/virtual-ecology-workbench
Toolkit for creating agent-based simulations of plankton ecosystems
Last synced: 24 Dec 2024
https://github.com/mrc-ide/rmnist
:one::writing_hand: R interface to the 'MNIST' collection of handwritten digits
Last synced: 24 Dec 2024
https://github.com/mrc-ide/stave
Spatial-temporal aggregate variant encoding
Last synced: 24 Dec 2024
https://github.com/mrc-ide/genescaper
Allele frequency mapping and outlier detection
Last synced: 24 Dec 2024
https://github.com/mrc-ide/covid-uk-mobility-report
Code to plot the figures and run the statistical analysis in: Anonymised & aggregated crowd level mobility data from mobile phones suggests initial compliance with COVID19 social distancing interventions was high & geographically consistent across UK
Last synced: 24 Dec 2024
https://github.com/mrc-ide/thecount
Joint Inference Framework for R0 and Epidemic Size
Last synced: 24 Dec 2024
https://github.com/mrc-ide/yepaux
R package containing auxiliary functions for use with YellowFeverDynamics package.
Last synced: 24 Dec 2024
https://github.com/mrc-ide/auth-api
An API for issuing authentication and authorization tokens
Last synced: 24 Dec 2024
https://github.com/mrc-ide/malsimtutorial
Course materials for malariasimulation modelling workshop on June 11
Last synced: 24 Dec 2024
https://github.com/mrc-ide/contact_matrix_data
Collated contact matrix data by country
Last synced: 24 Dec 2024
https://github.com/mrc-ide/rtss-ce
Cost-effectiveness of RTS,S vs. scale-up of existing interventions.
Last synced: 24 Dec 2024
https://github.com/mrc-ide/amms2022
This repository holds all of the code for the Applied Malaria Molecular Surveillance (AMMS) 2022 workshop, held at the EPHI in Addis Ababa, 5-7 August 2022.
Last synced: 24 Dec 2024
https://github.com/mrc-ide/wodin-shortcourse-2024
Introduction to Mathematical Models of the Epidemiology & Control of Infectious Diseases - 2024
Last synced: 24 Dec 2024
https://github.com/mrc-ide/pgeforge
A community-driven resource for enhancing Plasmodium genomic epidemiology analysis
Last synced: 24 Dec 2024
https://github.com/mrc-ide/china-exit-covid-19
Code, data, and supplemental material for the analysis of China's exit from their strict social distancing policy
Last synced: 06 Nov 2024
https://github.com/mrc-ide/google-form-post-cordova-plugin
Cordova plugin to submit a response to a Google Form
Last synced: 24 Dec 2024
https://github.com/mrc-ide/plasmosim
A basic Plasmodium simulator. Contains functions to simulate epidemiological and genetic data from a simple model of Plasmodium falciparum transmission.
Last synced: 24 Dec 2024
https://github.com/mrc-ide/rincewind
Utilities for processing forecasts, does a lot of things semi-competently
Last synced: 24 Dec 2024
https://github.com/mrc-ide/mlscluster
mlscluster: multilevel selection clustering algorithm
Last synced: 24 Dec 2024
https://github.com/mrc-ide/memprof
Monitor system or process memory over time
Last synced: 24 Dec 2024
https://github.com/mrc-ide/simpleepp
Simplified stylized implementation of UNAIDS Estimation and Projection Package (EPP) model
Last synced: 24 Dec 2024
https://github.com/mrc-ide/threemc_example
Self contained threemc example, to diagnose large memory usage.
Last synced: 24 Dec 2024
https://github.com/mrc-ide/ivrmectin
Malaria modelling framework to assess the impact of endectocide interventions
Last synced: 06 Nov 2024