Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
Projects in Awesome Lists by mrc-ide
A curated list of projects in awesome lists by mrc-ide .
https://github.com/mrc-ide/genescaper
Allele frequency mapping and outlier detection
Last synced: 24 Dec 2024
https://github.com/mrc-ide/covid-uk-mobility-report
Code to plot the figures and run the statistical analysis in: Anonymised & aggregated crowd level mobility data from mobile phones suggests initial compliance with COVID19 social distancing interventions was high & geographically consistent across UK
Last synced: 24 Dec 2024
https://github.com/mrc-ide/auth-api
An API for issuing authentication and authorization tokens
Last synced: 24 Dec 2024
https://github.com/mrc-ide/contact_matrix_data
Collated contact matrix data by country
Last synced: 24 Dec 2024
https://github.com/mrc-ide/amms2022
This repository holds all of the code for the Applied Malaria Molecular Surveillance (AMMS) 2022 workshop, held at the EPHI in Addis Ababa, 5-7 August 2022.
Last synced: 24 Dec 2024
https://github.com/mrc-ide/vimc_malaria
Imperial group malaria modelling for the Vaccine Impact Modelling Consortium
Last synced: 24 Dec 2024
https://github.com/mrc-ide/odin-dust-plots
Code to generate plots for 'Reproducible parallel inference and simulation of stochastic state space models using odin, dust, and mcstate'
Last synced: 24 Dec 2024
https://github.com/mrc-ide/foi_bayesian
Fitting force-of-infection (models) to age-(sero)prevalence data, incorporating diagnostic uncertainty (sensitvity and specificity) for single datasets and multiple datasets utilising a common diagnostic test.
Last synced: 24 Dec 2024
https://github.com/mrc-ide/malaria-orderly-web
Config and deployment for Malaria Orderly Web instance
Last synced: 24 Dec 2024
https://github.com/mrc-ide/mint-data
A public repository for the model simulation data used in MINT, the malaria intervention tool. (https://mint.dide.ic.ac.uk/)
Last synced: 24 Dec 2024
https://github.com/mrc-ide/dust-gpu-prototype
Prototype code for CUDA version of dust
Last synced: 24 Dec 2024
https://github.com/mrc-ide/git-workflow-demo
A repo for demonstrating how we use git to collaborate
Last synced: 24 Dec 2024
https://github.com/mrc-ide/arbomap
Web application displaying dengue indicators
Last synced: 24 Dec 2024
https://github.com/mrc-ide/agestructuredepicyst_analysis
Analysis code to support producing results (plots and tables) for manuscript submitted (Dixon et al. 2022) utilising age-structured EPICYST.
Last synced: 24 Dec 2024
https://github.com/mrc-ide/sa_longterm_hts
Code for reproducing results in HTS reduction paper
Last synced: 24 Dec 2024
https://github.com/mrc-ide/twinkle-cli
CLI for configuring the Twinkle shiny server
Last synced: 24 Dec 2024
https://github.com/mrc-ide/demography-orderly
Orderly implementation of malaria demography
Last synced: 24 Dec 2024
https://github.com/mrc-ide/repatriation-covid-19
Collated data on repatriation flights from Wuhan, China, between 29th Jan - 27th Feb
Last synced: 24 Dec 2024
https://github.com/mrc-ide/ppmcmc
🦟✨⛓🎲 Plasmodium particle Markov chain chain Monte Carlo
Last synced: 24 Dec 2024
https://github.com/mrc-ide/hivmappr
Small-area estimation of HIV prevalence, ART coverage, and HIV incidence
Last synced: 24 Dec 2024
https://github.com/mrc-ide/decart
Domestic case Estimates from Cases Among Returning Travellers - Java application
Last synced: 24 Dec 2024
https://github.com/mrc-ide/orderly-tutor-orderly-web
Orderly-web for orderly.dide.ic.ac.uk
Last synced: 24 Dec 2024
https://github.com/mrc-ide/hypatia
Individual-based COVID transmission model
Last synced: 24 Dec 2024
https://github.com/mrc-ide/hiv-orderly-web
Orderly web configuration for hiv-orderly
Last synced: 24 Dec 2024
https://github.com/mrc-ide/inference-data-orderly-image
Docker image build for inference-data orderly
Last synced: 24 Dec 2024
https://github.com/mrc-ide/covid19_south_korea_report
Data to run the analysis of the Imperial College London Report on South Korea's response to COVID-19
Last synced: 24 Dec 2024
https://github.com/mrc-ide/testthat.buildkite
Buildkite reporter for testthat
Last synced: 24 Dec 2024
https://github.com/mrc-ide/threemc
threeMC: Matt's Model for Male Circumcision
Last synced: 24 Dec 2024
https://github.com/mrc-ide/hipercow-api
🐮💻🐮 Web API for supporting cluster use via hipercow
Last synced: 24 Dec 2024
https://github.com/mrc-ide/drjacoby_submission
Scripts to carry out all analysis and reproduce tables and figures for the drjacoby manuscript submission.
Last synced: 24 Dec 2024
https://github.com/mrc-ide/global_raster_tools
:earth_africa: :world_map: Tools for handling shape files/rasterisation globally at 1/120 degree resolution
Last synced: 24 Dec 2024
https://github.com/mrc-ide/popimconnect
R package to convert between the population structures used in the YF model and in package vip
Last synced: 24 Dec 2024
https://github.com/mrc-ide/zika_vaccine
Designing clinical disease vaccine efficacy trials for Zika
Last synced: 24 Dec 2024
https://github.com/mrc-ide/zamcovid_kabwe_manuscript
Public repository for the Kabwe COVID-19 modelling manuscript.
Last synced: 24 Dec 2024
https://github.com/mrc-ide/wodin-shortcourse
Experimental wodin-based version of the short course app
Last synced: 24 Dec 2024
https://github.com/mrc-ide/vae_popgen
Inference under the lattice model in population genetics via Variational Auto-Encoders (VAEs)
Last synced: 24 Dec 2024
https://github.com/mrc-ide/buildkite-reporter-test
Example repo for testing testthat.buildkite reporter
Last synced: 24 Dec 2024
https://github.com/mrc-ide/naomi.utils
Utility Functions For Naomi Datasets
Last synced: 06 Nov 2024
https://github.com/mrc-ide/child_covid19_lit_review
Code and results associated with systematic literature review
Last synced: 24 Dec 2024
https://github.com/mrc-ide/shiny
:star2::books::star2: documentation and (eventually) scripts for our shiny setup
Last synced: 24 Dec 2024
https://github.com/mrc-ide/spatialbranchr
What the Package Does (One Line, Title Case)
Last synced: 24 Dec 2024
https://github.com/mrc-ide/public-events-zombie-sim-android
Android app to control Zombie Sim 2 remotely
Last synced: 24 Dec 2024
https://github.com/mrc-ide/safir2
squire and friends individual rewrite rewrite
Last synced: 24 Dec 2024
https://github.com/mrc-ide/rtss_impact_cea_2021
🦟❌ Update of analysis from Penny et al 2015 ❌🦟
Last synced: 24 Dec 2024
https://github.com/mrc-ide/serialization
A kotlin package for de/serializing large CSV files with variable column headers into fixed types
Last synced: 24 Dec 2024
https://github.com/mrc-ide/plasmomapi_submission
Holds scripts etc. needed to reproduce all figures and tables from the PlasmoMAPI submission.
Last synced: 24 Dec 2024
https://github.com/mrc-ide/sim
Not a repository anyone should actually use for anything
Last synced: 24 Dec 2024
https://github.com/mrc-ide/public-events-zombie-sim-c
The Zombie Spatial Simulator Core
Last synced: 24 Dec 2024