Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
Projects in Awesome Lists by pbs-assess
A curated list of projects in awesome lists by pbs-assess .
https://github.com/pbs-assess/sdmtmb
:earth_americas: An R package for spatial and spatiotemporal GLMMs with TMB
ecology glmm r spatial-analysis species-distribution-modelling tmb
Last synced: 04 Jan 2025
https://github.com/pbs-assess/sdmTMB
:earth_americas: An R package for spatial and spatiotemporal GLMMs with TMB
ecology glmm r spatial-analysis species-distribution-modelling tmb
Last synced: 14 Nov 2024
https://github.com/pbs-assess/csasdown
:book: An R package for creating CSAS reports in PDF or Word format with R Markdown and bookdown
Last synced: 10 Jan 2025
https://github.com/pbs-assess/sdmtmb-teaching
:student: Workshops on the R package sdmTMB
Last synced: 07 Jan 2025
https://github.com/pbs-assess/pacea
An R package to house Pacific Region ecosystem data to help facilitate an ecosystem approach to fisheries.
Last synced: 07 Jan 2025
https://github.com/pbs-assess/gfsynopsis
:fish: A reproducible data synopsis report for over 100 species of British Columbia groundfish
fisheries r-package r-stats visualization
Last synced: 07 Jan 2025
https://github.com/pbs-assess/stme-book
Notes and code working through 'Spatio-Temporal Models for Ecologists'
Last synced: 10 Nov 2024
https://github.com/pbs-assess/git-course
A repository for teaching the fundamentals of GIT
Last synced: 07 Jan 2025
https://github.com/pbs-assess/sdmtmbextra
:hammer: Extra tools for working with sdmTMB models
Last synced: 07 Jan 2025
https://github.com/pbs-assess/gfiphc
:fishing_pole_and_fish: An R package for data extraction and analysis of groundfish data from the IPHC Longline Survey in British Columbia
Last synced: 07 Jan 2025
https://github.com/pbs-assess/tttworkshop
Workshop on tools for transparent, traceable and transferable assessments
Last synced: 07 Jan 2025
https://github.com/pbs-assess/ggmse
:wrench: Tools for working with DLMtool and MSEtool
Last synced: 10 Nov 2024
https://github.com/pbs-assess/cpue-reports
:books: Standardized commercial catch-per-unit-effort reports for Pacific groundfish
Last synced: 07 Jan 2025
https://github.com/pbs-assess/larkin
Fit and forecast from Larkin and Ricker stock-recruitment models
Last synced: 10 Nov 2024
https://github.com/pbs-assess/rosettafish
:fishing_pole_and_fish: An R package for translating fish- and fisheries-related terms
Last synced: 10 Nov 2024
https://github.com/pbs-assess/gfplot
:chart_with_upwards_trend: An R package for plotting of BC groundfish data
Last synced: 10 Nov 2024
https://github.com/pbs-assess/pacific-cod-2023
Status update for WCVI Pacific Cod stock
Last synced: 07 Jan 2025
https://github.com/pbs-assess/pacific-cod-2022-twg
Looking at possible impacts of the loss of commercial sampling on the Pacific cod assessment
Last synced: 07 Jan 2025
https://github.com/pbs-assess/qfd
Assorted code while reading Quantitative Fish Dynamics
Last synced: 07 Jan 2025
https://github.com/pbs-assess/pbsedm
An R package to implement some of the methods of empirical dynamic modelling
Last synced: 07 Jan 2025
https://github.com/pbs-assess/gfmpa
Analysis of closed areas impact on survey indices
Last synced: 07 Jan 2025
https://github.com/pbs-assess/ggspider
:spider: A generalized spider plot package
Last synced: 07 Jan 2025
https://github.com/pbs-assess/hakedata
:wrench: Data extraction for Pacific hake annual assessment
Last synced: 07 Jan 2025
https://github.com/pbs-assess/gfranges
:earth_americas: Spatiotemporal modelling of BC groundfish ranges and their response to climate
Last synced: 07 Jan 2025
https://github.com/pbs-assess/gfiscam
:cyclone: Groundfish integrated catch-age model
Last synced: 07 Jan 2025
https://github.com/pbs-assess/gfdata
:floppy_disk: An R package for data extraction of BC groundfish data
Last synced: 07 Jan 2025
https://github.com/pbs-assess/stockseasonr
:fishing_pole_and_fish: Seasonal predictions of stock composition and abundance
Last synced: 07 Jan 2025
https://github.com/pbs-assess/tmbpop
(Experimental) R package for implementing TMB age-structured POP model
Last synced: 07 Jan 2025
https://github.com/pbs-assess/gfindex
Geostatistical index standardization of synoptic trawl surveys
Last synced: 07 Jan 2025
https://github.com/pbs-assess/ireccalibration
Irec creel calibration project
Last synced: 07 Jan 2025
https://github.com/pbs-assess/hake
:fish: Extract and present Pacific hake data for the annual assessment. This project utilizes the https://github.com/pbs-assess/hakedata package
Last synced: 07 Jan 2025
https://github.com/pbs-assess/tex-table-tagging
Minimal examples of issues with TeX table tagging
Last synced: 07 Jan 2025
https://github.com/pbs-assess/stocksummary
R package (eventually) for automatically producing annual stock summaries
Last synced: 07 Jan 2025
https://github.com/pbs-assess/sardinesr
Sardine Scientific Response document. Based on pbs-assess/csasdown
Last synced: 07 Jan 2025
https://github.com/pbs-assess/tesa-uncertainty-talk
Talk on uncertainty for 2018 TESA WebEx series (Introduction to Stock Assessment)
Last synced: 07 Jan 2025
https://github.com/pbs-assess/hookcompetition
An R package for estimating relative abundance indices from longline data using a censored likelihood approach
Last synced: 07 Jan 2025
https://github.com/pbs-assess/pacea-data
A data repository for very large data sets that get used by the pacea package
Last synced: 07 Jan 2025
https://github.com/pbs-assess/renewassess
Discussion board for stock assessment renewal group
Last synced: 07 Jan 2025
https://github.com/pbs-assess/dogfish-inside
Stock Assessment for Inside Dogfish Stock in British Columbia
Last synced: 07 Jan 2025
https://github.com/pbs-assess/gfcommercial
Groundfish Commercial Biosampling Compendium
Last synced: 07 Jan 2025
https://github.com/pbs-assess/herringsr
:paperclip: :fish: Herring Science Response document
Last synced: 07 Jan 2025
https://github.com/pbs-assess/gftrends
Trends in Pacific Canadian groundfish stock status
Last synced: 07 Jan 2025
https://github.com/pbs-assess/herringutils
:wrench: Utilities for Herring documents based on https://github.com/pbs-assess/gfiscam models
Last synced: 07 Jan 2025
https://github.com/pbs-assess/joint-surveys
Combining biennial PBS groundfish surveys into joint surveys
Last synced: 07 Jan 2025
https://github.com/pbs-assess/pacific-cod-2018
Building the working paper and analyses for the 2018 BC Pacific Cod assessment
Last synced: 07 Jan 2025
https://github.com/pbs-assess/gfmp
:zap: Pacific Groundfish Management Procedure Framework
Last synced: 07 Jan 2025
https://github.com/pbs-assess/gfbib
BibTeX references for Pacific groundfish reports
Last synced: 07 Jan 2025
https://github.com/pbs-assess/recruitea
An R package to investigate the impacts of ecosystem variability on recruitment using full MCMC results
Last synced: 07 Jan 2025
https://github.com/pbs-assess/gfutilities
:wrench: An R package to hold groundfish utility functions
Last synced: 07 Jan 2025
https://github.com/pbs-assess/gfclosed
Testing the effect of potential closed areas on survey-derived biomass indices
Last synced: 07 Jan 2025
https://github.com/pbs-assess/gfiscamutils
:hammer: Utilities for https://github.com/pbs-assess/gfiscam models, including loading, plotting, and table-making
Last synced: 07 Jan 2025
https://github.com/pbs-assess/mve
Forecast From Multi-View Embedding (MVE) And Empirical Dynamic Modelling (EDM) Methods
Last synced: 07 Jan 2025
https://github.com/pbs-assess/ddrtmb
A delay-difference model written in RTMB
Last synced: 07 Jan 2025
https://github.com/pbs-assess/arrowtooth
https://pbs-assess.github.io/arrowtooth/
Last synced: 07 Jan 2025
https://github.com/pbs-assess/seesaw
Diagnosing causes of the 'seesaw' effect in survey indices
Last synced: 07 Jan 2025
https://github.com/pbs-assess/herringfsar
Herring stock assessment document
Last synced: 07 Jan 2025
https://github.com/pbs-assess/dogfish-survey
Strait of Georgia Dogfish longline survey data pull with hook comparison studies
Last synced: 07 Jan 2025
https://github.com/pbs-assess/dogfish-trends
Coastwide Pacific Spiny Dogfish trends
dogfish ecology gmrf groundfish sdm sdmtmb spatiotemporal
Last synced: 07 Jan 2025
https://github.com/pbs-assess/lingcod-inside
Stock Assessment for Inside Lingcod Stock in British Columbia
Last synced: 07 Jan 2025