Projects in Awesome Lists by rscherrer
A curated list of projects in awesome lists by rscherrer .
https://github.com/rscherrer/daisietreeplot
R function to plot the input of a DAISIE phylogenetic analysis pipeline
Last synced: 12 Mar 2025
https://github.com/rscherrer/ggsim
A set of wrappers around R's ggplot2 tailored at simulation data
Last synced: 12 Mar 2025
https://github.com/rscherrer/dewlap
Comparing dewlap coloration across islands in Caribbean lizards
Last synced: 15 Apr 2025
https://github.com/rscherrer/explicitgenomespeciation
An individual based simulation of adaptive speciation with explicit genome, additive and non-additive genetic effects
Last synced: 12 Mar 2025
https://github.com/rscherrer/speciomx
Adaptive dynamics approximation of the speciome model
Last synced: 12 Mar 2025
https://github.com/rscherrer/ggrm
An R package with (short) functions to remove elements from a ggplot
Last synced: 12 Mar 2025
https://github.com/rscherrer/evo-bio-cc-quantitative-genetics-practical
Practical on Quantitative Genetics for the EvoBio Crash Course
Last synced: 12 Mar 2025
https://github.com/rscherrer/detectspeciationarchitecture
Research project on using neural networks to detect the genetic architecture underlying speciation as simulated by the ExplicitGenomeSpeciation model
Last synced: 12 Mar 2025
https://github.com/rscherrer/brachypoder
An R package to read the data from the brachypode simulations
Last synced: 12 Mar 2025
https://github.com/rscherrer/evo-bio-cc
Mirror to my contributions to the Crash Course in Evolutionary Biology
Last synced: 12 Mar 2025
https://github.com/rscherrer/raph-workflow
My personal workflow and organization in doing science
Last synced: 12 Mar 2025
https://github.com/rscherrer/aging-birds
Example scripts to explore the distribution of senescence-associated CpG islands in bird genomes
Last synced: 12 Mar 2025
https://github.com/rscherrer/diabetes-chronicle
Analysis of blood sugar to estimate the right amount of insulin to inject
Last synced: 18 Feb 2025
https://github.com/rscherrer/diabetes-chronicle-ms
Report for the diabetes chronicle project.
Last synced: 18 Feb 2025
https://github.com/rscherrer/egs_tools
A toolbox to analyze simulation results from ExplicitGenomeSpeciation
Last synced: 12 Mar 2025
https://github.com/rscherrer/speciome-mating
Making a picture of the mating function used in the speciome study
Last synced: 12 Mar 2025
https://github.com/rscherrer/need-for-speed
Thoughts on optimizing simulation workflow on a computer cluster
Last synced: 12 Mar 2025
https://github.com/rscherrer/speciomx-nb
Mathematica notebooks for speciomx
Last synced: 12 Mar 2025
https://github.com/rscherrer/useful
A bunch of useful tips I learnt during my PhD
Last synced: 12 Mar 2025
https://github.com/rscherrer/tau
A snapshot into the effect of parameter tau on the features of PBD trees
Last synced: 12 Mar 2025
https://github.com/rscherrer/allocorrect
An R package to correct for allometry in sexually dimorphic traits
allometry morphometrics sexual-dimorphism
Last synced: 12 Mar 2025
https://github.com/rscherrer/reschoicer
R package to read the data from reschoice
Last synced: 12 Mar 2025
https://github.com/rscherrer/utilebarc
Plotting utilities in R for the ebarc project
Last synced: 12 Mar 2025
https://github.com/rscherrer/brachypode
Individual-based simulation of a facilitated plant in a patchy landscape
adaptation adaptive-dynamics climate-change ecological-facilitation evolution simulation
Last synced: 12 Mar 2025
https://github.com/rscherrer/rscherrer
My profile page
adaptation color cpp evolution genetics genomics groningen machine-learning mathematica matlab modeling phd programming python rstats speciation statistics
Last synced: 12 Mar 2025
https://github.com/rscherrer/rules-of-thumb
Rules of thumb when conducting research
Last synced: 12 Mar 2025
https://github.com/rscherrer/gammafinder
Script to find the parameters of a Gamma distribution from quantiles
Last synced: 12 Mar 2025
https://github.com/rscherrer/resource-dynamics-of-a-speciation-model
Comparison of the chemostat and the logistic resource models
Last synced: 12 Mar 2025
https://github.com/rscherrer/radiate
A model of sustained high rates of speciation during adaptive radiations
Last synced: 12 Mar 2025
https://github.com/rscherrer/brachypode-nb
Folder with deterministic approximations of brachypode
Last synced: 12 Mar 2025
https://github.com/rscherrer/simarray
Scripts to set up many simulations
combinations parameters simulation
Last synced: 12 Mar 2025
https://github.com/rscherrer/speciome-approx-data
Data generated using speciomx
Last synced: 12 Mar 2025
https://github.com/rscherrer/overleaf
Mock TeX project to show how Overleaf integrates with GitHub.
Last synced: 12 Mar 2025
https://github.com/rscherrer/sagreicolor
R Package to study dewlap coloration across habitats in Anolis sagrei
Last synced: 12 Mar 2025
https://github.com/rscherrer/mcelreath
Me taking Richard McElreath's course of Bayesian inference
Last synced: 12 Mar 2025
https://github.com/rscherrer/minimalboosttestedprogram
A minimal example of a C++ program tests with Boost.Test and built under Windows using CLion/Cmake
Last synced: 12 Mar 2025
https://github.com/rscherrer/hemigener
R package accompanying the hemigene program
Last synced: 12 Mar 2025
https://github.com/rscherrer/evolvable-lizards
Mirror to several projects on the effect of sexual selection on evolvability in lizards
anolis eco-morphology evolution evolvability lizards sexual-selection visual-modeling
Last synced: 12 Mar 2025
https://github.com/rscherrer/fossilfinds
Abundances of various fossils in my parents' garden (Bathonian shallow sea)
Last synced: 12 Mar 2025
https://github.com/rscherrer/epianalysis
Functions to analyze the output of the epispec simulations
Last synced: 12 Mar 2025
https://github.com/rscherrer/evo-bio-cc-practical-template
Template for making a practical in Rmarkdown
Last synced: 12 Mar 2025
https://github.com/rscherrer/binarywriter
A toy project to learn how to output from C++ into binary files
Last synced: 12 Mar 2025
https://github.com/rscherrer/ebarc
Evolutionary branching with adaptive resource choice
Last synced: 12 Mar 2025
https://github.com/rscherrer/binaryreader
Trying a Python program to read binary data
Last synced: 12 Mar 2025
https://github.com/rscherrer/mmmm
A More Mechanistic Model of Macroevolution
Last synced: 12 Mar 2025
https://github.com/rscherrer/speciome
Simulation of adaptive speciation with complex genotype-phenotype map
divergence evolution fst genetics genomics simulation speciation
Last synced: 12 Mar 2025
https://github.com/rscherrer/sugar
My sugar levels for functional insulinotherapy
Last synced: 12 Mar 2025
https://github.com/rscherrer/peregrinecontent
Notes on how to do stuff on the Peregrine cluster
Last synced: 12 Mar 2025
https://github.com/rscherrer/adaptive-dynamics-analysis-of-a-speciation-model
Manuscript on the adaptive dynamics of a parapatric speciation model
Last synced: 12 Mar 2025
https://github.com/rscherrer/cc2023
Scripts for my lectures at the Crash Course in Evolutionary Biology 2023
Last synced: 12 Mar 2025
https://github.com/rscherrer/bop
R package for handling color data in a study of punctuated equilibrium in birds of paradise
Last synced: 12 Mar 2025
https://github.com/rscherrer/speciome-approx
Deterministic approximation of the speciome model
Last synced: 12 Mar 2025
https://github.com/rscherrer/seedtester
A small program to understand how Travis resets seeds in C++
Last synced: 12 Mar 2025
https://github.com/rscherrer/warbler-gams
Scripts for senescence analysis using GAMs in Seychelles warblers
Last synced: 12 Mar 2025
https://github.com/rscherrer/mutualistic-ntt
Example scripts to plot network statistics through time across simulations
Last synced: 12 Mar 2025
https://github.com/rscherrer/commandments
Rules I find useful when doing research
Last synced: 12 Mar 2025
https://github.com/rscherrer/bayesian-lizards
Small script to illustrate a model to analyze some lizard data
Last synced: 12 Mar 2025
https://github.com/rscherrer/review
The template I use when peer-reviewing articles
Last synced: 12 Mar 2025
https://github.com/rscherrer/cc2023-practical-template
Template for practicals in Rmarkdown
Last synced: 12 Mar 2025
https://github.com/rscherrer/nmgc
Nested Multivariate Group Comparisons in R
Last synced: 12 Mar 2025
https://github.com/rscherrer/minover
Minover algorithm, machine learning assignment
Last synced: 12 Mar 2025
https://github.com/rscherrer/reschoice
Simulation of evolutionary branching under optimal resource choice
behavior branching ecology evolution foraging individual-based modeling resources selection simulation speciation
Last synced: 12 Mar 2025
https://github.com/rscherrer/evo-bio-cc-sexual-selection-practical
Practical on Sexual Selection for the EvoBio Crash Course
Last synced: 12 Mar 2025
https://github.com/rscherrer/epispec
Modelling adaptive speciation with epistatic interactions
Last synced: 12 Mar 2025
https://github.com/rscherrer/ggfacet
A wrapper around ggplot2's facetting functions for nice-looking facetted plots in R
Last synced: 12 Mar 2025
https://github.com/rscherrer/ebarc_analysis
Utilities in R to plot and analyze the results of an adaptive dynamics study of the effect of resource choice on ecological speciation
Last synced: 12 Mar 2025
https://github.com/rscherrer/guide-for-collaborators
My go-to collaboration workflow
Last synced: 12 Mar 2025