https://github.com/smaegol/plasflow

Software for prediction of plasmid sequences in metagenomic assemblies

classification contigs fasta metagenome metagenome-assembly metagenomes plasflow plasmid plasmid-sequences plasmids prediction tensorflow

Last synced: 16 Dec 2024

https://github.com/smaegol/nanotail

R package for visualization and exploratory analysis of Oxford Nanopore direct RNA seq based polyA predictions

bioinformatics nanopolish nanopore nanopore-sequencing polya polya-tail rna rna-sequencing shiny

Last synced: 13 Apr 2025

https://github.com/smaegol/line_1_race_seq_analysis

Scripts and data used during the analysis of LINE-1 RACE seq tail-seq output, for the publication "Uridilation by TUT4/7 restricts retrotransposition of human LINE-1"s (Warkocki et al 2018, Cell, available at https://doi.org/10.1016/j.cell.2018.07.022)

line1 raceseq tailseq

Last synced: 13 Apr 2025

https://github.com/smaegol/laccases

Last synced: 10 Apr 2025

https://github.com/smaegol/plasflow_models

Additional models used during development of PlasFlow

Last synced: 10 Apr 2025

https://github.com/smaegol/plasflow_processing

Scripts used during the development of PlasFlow

Last synced: 10 Apr 2025

https://github.com/smaegol/raceseq_scripts

Various scripts for use in raceseq analysis

Last synced: 10 Apr 2025

https://github.com/smaegol/biostrext

Extension to Biostrings R package

Last synced: 10 Apr 2025

https://github.com/smaegol/scripts

various scripts used in routine bioinfo work

Last synced: 10 Apr 2025

https://github.com/smaegol/polya_browser

polyA_browser

Last synced: 10 Apr 2025

https://github.com/smaegol/nano_scripts

Last synced: 10 Apr 2025

https://github.com/smaegol/testpage

Last synced: 10 Apr 2025