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Medical imaging

Medical imaging is the technique and process of creating visual representations of the interior of a body for clinical analysis, and medical intervention.

GitHub: https://github.com/topics/medical-imaging
Wikipedia: https://en.wikipedia.org/wiki/Medical_imaging
Related Topics: imaging, image-processing, ultrasound, x-ray,
Aliases: biological-imaging, ultrasound-imaging,
Last updated: 2025-02-03 00:18:24 UTC
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https://github.com/fepegar/unet

"pip install unet": PyTorch Implementation of 1D, 2D and 3D U-Net architecture.

convolutional-neural-networks deep-learning medical-imaging unet unet-image-segmentation unet-pytorch

Last synced: 28 Jan 2025

https://github.com/nyumedml/cnn_design_for_ad

Code for "Generalizable deep learning model for early Alzheimer’s disease detection from structural MRIs"

alzheimer-disease artificial-intelligence brain-mri clinical-data convolutional-neural-networks deep-learning dementia medical-imaging mild-cognitive-impairment mri

Last synced: 05 Nov 2024

https://github.com/guanhuaw/mirtorch

A PyTorch-powered differentiable image reconstruction/optimization toolbox

magnetic-resonance-imaging medical-imaging model-based pytorch

Last synced: 31 Jan 2025

https://github.com/BiomedSciAI/fuse-med-ml

A python framework accelerating ML based discovery in the medical field by encouraging code reuse. Batteries included :)

ai cmmd collaboration ct deep-learning fuse fuse-med-ml fusemedml hacktoberfest healthcare isic knight-challenge machine-learning medical medical-imaging multimodality python pytorch stoic vision

Last synced: 15 Nov 2024

https://github.com/MarvinLer/tcga_segmentation

Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024

computational-pathology data-efficient histopathology image-segmentation medical-imaging miccai multiple-instance-learning pathology segmentation slide-image-segmentation tcga tcga-data tumor-segmentation weakly-supervised-learning whole-slide-imaging wsi

Last synced: 13 Nov 2024

https://github.com/CVxTz/medical_image_segmentation

Medical image segmentation ( Eye vessel segmentation)

convolutional-neural-networks keras medical-imaging segmentation

Last synced: 15 Nov 2024

https://github.com/seva100/optic-nerve-cnn

Code repository for a paper "Optic Disc and Cup Segmentation Methods for Glaucoma Detection with Modification of U-Net Convolutional Neural Network"

computer-vision cup-segmentation-methods glaucoma-detection ipynb medical-imaging optic-disc paper

Last synced: 20 Dec 2024

https://github.com/alexlaurence/nifti-image-converter

🖼 A lightweight neuroimaging .nii to .png converter for Matlab and Python users

convert-images converter matlab medical-imaging neuroimaging nifti opencv png python

Last synced: 29 Jan 2025

https://github.com/ahmedbesbes/mrnet

Building an ACL tear detector to spot knee injuries from MRIs with PyTorch (MRNet)

acl cnn computer-vision convolutional-neural-networks data-augmentation deep-learning knee-injuries medical-imaging mri-applications mri-exams mri-images mrnet paper-implementations pytorch pytorch-tutorial sagittal-plane stanford stanford-ml-group tears transfer-learning

Last synced: 23 Nov 2024

https://github.com/pytomography/pytomography

This repository enables easy and fast medical image reconstruction in Python.

image-reconstruction medical-imaging nuclear-medicine python pytorch quantitative-imaging spect

Last synced: 02 Feb 2025

https://github.com/biapyx/biapy

Open source Python library for building bioimage analysis pipelines

biomedical-image-processing classification computer-vision convolutional-neural-networks deep-learning denoising image-processing image-segmentation instance-segmentation machine-learning medical-imaging object-detection python pytorch segmentation self-supervised-learning semantic-segmentation super-resolution

Last synced: 27 Jan 2025

https://github.com/medtagger/MedTagger

A collaborative framework for annotating medical datasets using crowdsourcing.

crowdsourcing data-science data-validation deep-learning labeling medical-imaging

Last synced: 15 Nov 2024

https://github.com/dltk/models

DLTK Model Zoo

cnn data-science deep-learning deep-neural-networks dltk dltk-model-zoo machine-learning medical medical-image-processing medical-imaging models pre-trained

Last synced: 09 Nov 2024

https://github.com/ivmartel/dwv-react

Medical image viewer using DWV (DICOM Web Viewer) and React.

dicom-web-viewer dwv medical-imaging react reactjs

Last synced: 02 Feb 2025

https://github.com/llnl/leap

comprehensive library of 3D transmission Computed Tomography (CT) algorithms with Python and C++ APIs, a PyQt GUI, and fully integrated with PyTorch

abel-transform artificial-intelligence beamhardening bhc computed-tomography cone-beam ct helical-reconstruction image-reconstruction iterative-reconstruction leap machine-learning medical-imaging metal-artifact-reduction parallel-beam scatter-correction spect tomographic-reconstruction tomography vam

Last synced: 27 Jan 2025

https://github.com/biomedia-mira/istn

Image-and-Spatial Transformer Networks

deep-learning image-registration medical-imaging spatial-transformer-networks

Last synced: 15 Nov 2024

https://github.com/EIDOSLAB/torchstain

Stain normalization tools for histological analysis and computational pathology

computational-pathology digital-pathology histopathology medical-imaging numpy python pytorch stain-normalization tensorflow

Last synced: 13 Nov 2024

https://github.com/ivmartel/dwv-vue

Medical image viewer using DWV (DICOM Web Viewer) and Vue.js.

dicom-web-viewer dwv medical-imaging vue vuejs

Last synced: 02 Feb 2025

https://github.com/project-monai/monai-deploy

MONAI Deploy aims to become the de-facto standard for developing, packaging, testing, deploying and running medical AI applications in clinical production.

ai ai-application-deployment ai-application-development deep-learning dicom fhir guidelines healthcare inference machine-learning medical-imaging ml-platform mlops monai open-standard pathology python pytorch radiology

Last synced: 16 Dec 2024

https://github.com/fitushar/3d-guidedgradcam-for-medical-imaging

This Repo containes the implemnetation of generating Guided-GradCAM for 3D medical Imaging using Nifti file in tensorflow 2.0. Different input files can be used in that case need to edit the input to the Guided-gradCAM model.

3d-guided-grad-cam 3d-models cnn-visualization cnn-visualization-technique ctci explainable-ai explainable-ai-in-medical-imaging explainable-artificial-intelligence guided-grad-cam medical-imaging nifti tensorflow-examples tensorflow2

Last synced: 12 Nov 2024

https://github.com/project-monai/monai-deploy-app-sdk

MONAI Deploy App SDK offers a framework and associated tools to design, develop and verify AI-driven applications in the healthcare imaging domain.

ai deep-learning deploy dicom healthcare image-processing machine-learning medical-imaging ml ml-infrastructure ml-platform mlops model-deployment model-serving monai pipeline python pytorch workflow

Last synced: 03 Feb 2025

https://github.com/brianmanderson/dicom_rt_and_images_to_mask

Tools to help with the conversion of DICOM images, RT Structures, and dose to useful Python objects. Essentially DICOM to NumPy and SimpleITK Images

binary-masks deep-learning deeplearning dicom dicom-images dicomrt mask medical-image-processing medical-imaging nifti-images numpy python roi roi-segmentation rt-struct rt-structs rt-utils rtstruct

Last synced: 03 Feb 2025

https://github.com/cornerstonejs/react-cornerstone-viewport

Cornerstone medical image viewport component for React

cornerstone dicom javascript medical-imaging nci-itcr react

Last synced: 09 Nov 2024

https://github.com/hilab-git/dag4mia

Domain Adaptation and Generalization for Medical Image Analysis

domain-adaptation domain-generalization medical-imaging

Last synced: 05 Nov 2024

https://github.com/mazurowski-lab/finetune-SAM

This is an official repo for fine-tuning SAM to customized medical images.

finetune foundation-models medical-imaging sam

Last synced: 30 Nov 2024

https://github.com/aim-harvard/foundation-cancer-image-biomarker

[Nature Machine Intelligence 2024] Code and evaluation repository for the paper

cancer-imaging-research foundation-models medical-imaging representation-learning simclr

Last synced: 01 Feb 2025

https://github.com/ccipd/MRQy

MRQy is a quality assurance and checking tool for quantitative assessment of magnetic resonance imaging (MRI) data.

imaging machine-learning medical-image-processing medical-imaging medical-physics mri python quality-assurance quality-control quality-metrics

Last synced: 12 Nov 2024

https://github.com/pyplati/platipy

Processing Library and Analysis Toolkit for Medical Imaging in Python

image-analysis medical-imaging python registration segmentation visualization

Last synced: 10 Nov 2024

https://github.com/lamyj/odil

Odil is a C++11 library for the DICOM standard

c-plus-plus dicom medical-imaging python

Last synced: 17 Nov 2024

https://github.com/gradienthealth/dicom

High Performance DICOM Medical Image Parser in Go.

dicom dicom-images golang golang-package image medical medical-imaging pacs parser reader

Last synced: 29 Jan 2025

https://github.com/ternaus/angiodysplasia-segmentation

Wining solution and its further development for MICCAI 2017 Endoscopic Vision Challenge Angiodysplasia Detection and Localization

computer-vision deep-learning image-segmentation medical-imaging python pytorch

Last synced: 07 Jan 2025

https://github.com/raamana/visualqc

VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.

alignment anatomical-mri cortex fmri freesurfer medical-imaging mri-images neuroimaging neuroscience outlier-detection outlier-removal qc quality-control registration

Last synced: 03 Jan 2025

https://github.com/nyumedml/darts

Code for DARTS: DenseUnet-based Automatic Rapid Tool for brain Segmentation

artificial-intelligence brain-mri brain-segmentation deep-learning freesurfer medical-imaging pytorch unet

Last synced: 21 Dec 2024

https://github.com/eigenvivek/diffpose

[CVPR 2024] Intraoperative 2D/3D registration via differentiable X-ray rendering

2d-3d-registration camera-pose-estimation differentiable-rendering medical-imaging

Last synced: 27 Oct 2024

https://github.com/mercure-imaging/mercure

mercure DICOM Orchestrator

ai deep-learning dicom medical medical-image-processing medical-imaging open-source routing

Last synced: 19 Nov 2024

https://github.com/RivuletStudio/rivuletpy

Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Install & use in 5 mins.

airways arteries centerline curvilinear-coordinates image-processing medical-image-processing medical-imaging morphology neuroinformatics neuron python rivulet2-algorithm tracing

Last synced: 14 Nov 2024

https://github.com/extreme-assistant/survey-computer-vision-2021

2021年计算机视觉技术综述分类汇总

computer-vision deep-learning detection face-recognition image-processing image-recognition image-segmentation medical-imaging object-detection object-tracking survey

Last synced: 18 Jan 2025

https://github.com/ellisdg/frangi3d

Computes vesselness scores for 3-dimensional images.

3d 3d-numpy-arrays computer-vision frangi-filter image-processing image-segmentation medical-imaging numpy python

Last synced: 19 Nov 2024

https://github.com/fedml-ai/fedcv

FedCV: An Industrial-grade Federated Learning Framework for Diverse Computer Vision Tasks

computer-vision federated-learning image-classifiation image-segmentation medical-imaging object-detection

Last synced: 01 Jan 2025

https://github.com/ad12/meddlr

A flexible ML framework built to simplify medical image reconstruction and analysis experimentation.

inverse-problems machine-learning medical-imaging mri

Last synced: 30 Jan 2025

https://github.com/IRCAD/sight

Surgical Image Guidance and Healthcare Toolkit

c-plus-plus-11 itk medical-application medical-image-processing medical-imaging ogre3d opencv qt5 vr-render vtk

Last synced: 27 Oct 2024

https://github.com/CrowdCurio/time-series-annotator

Time series annotation library.

annotation crowdcurio medical-imaging time-series

Last synced: 05 Nov 2024

https://github.com/SyneRBI/SIRF

Main repository for the CCP SynerBI software

image-reconstruction medical-imaging pet-mr

Last synced: 10 Nov 2024

https://github.com/sayakpaul/breast-cancer-detection-using-deep-learning

Experiments to show the usage of deep learning to detect breast cancer from breast histopathology images

class-imbalance computer-vision deep-learning fastai medical-imaging resnet50

Last synced: 13 Jan 2025

https://github.com/jgamper/compay-syntax

:microscope: Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.

computational-pathology medical-imaging openslide pathology-image slide-images whole-slide-image whole-slide-imaging wsis

Last synced: 13 Nov 2024

https://github.com/aimansnigdha/ambiguous-medical-image-segmentation-using-diffusion-models

Accepted in CVPR 2023

medical-imaging segmentation

Last synced: 10 Nov 2024

https://github.com/huangzhii/nuclei.io

nuclei.io: Human-in-the-loop active learning framework for pathology image analysis

ai medical-imaging pathology whole-slide-image

Last synced: 06 Jan 2025

https://github.com/kumarshreshtha/image-registration-cnn

A pytorch implementation of CNN based MRI image registration based on Christodoulidis Stergios et al. "Linear and Deformable Image Registration with 3D Convolutional Neural Networks", 2018.

cnn convolutional-neural-networks deep-learning image-registration medical-imaging pytorch

Last synced: 15 Nov 2024

https://github.com/grailbio/go-dicom

DICOM parser for golang

bioinformatics dicom golang medical-imaging

Last synced: 09 Nov 2024

https://github.com/andreped/nocodeseg

🔬 Code-free deep segmentation for computational pathology

annotation convolutional-neural-networks cpp deep-learning deepmib digital-pathology fastpathology java matlab medical-imaging multi-class open-annotations open-datasets qupath semantic-segmentation u-net

Last synced: 18 Dec 2024

https://github.com/cornerstonejs/cornerstoneMath

Math and computation geometry functionality for cornerstone

cornerstone javascript medical-imaging nci-itcr

Last synced: 09 Nov 2024

https://github.com/cornerstonejs/cornerstonemath

Math and computation geometry functionality for cornerstone

cornerstone javascript medical-imaging nci-itcr

Last synced: 29 Jan 2025

https://github.com/warvito/generative_chestxray

Repository to train Latent Diffusion Models on Chest X-ray data (MIMIC-CXR) using MONAI Generative Models

chest-xray-images diffusion-models latent-diffusion-models medical-imaging mimic-cxr monai

Last synced: 02 Nov 2024

https://github.com/MR-HosseinzadehTaher/BenchmarkTransferLearning

Official PyTorch Implementation and Pre-trained Models for Benchmarking Transfer Learning for Medical Image Analysis

benchmarking deep-learning domain-adaptation imagenet-models inaturalist-2021 medical-imaging pytorch self-supervised-learning supervised-learning transfer-learning

Last synced: 05 Nov 2024

https://github.com/brudfors/unires

Model-based super-resolution of medical images in PyTorch.

computed-tomography magnetic-resonance-imaging medical-imaging super-resolution

Last synced: 18 Dec 2024

https://github.com/jonclayden/rnifti

Fast R and C++ access to NIfTI images

medical-imaging nifti-format r

Last synced: 30 Jan 2025

https://github.com/nish03/FunFuseAn

Code for MICCAI Workshop 2019 paper "Structural Similarity based Anatomical and Functional Brain Imaging Fusion"

deep-learning fusion medical-imaging

Last synced: 13 Nov 2024

https://github.com/jonclayden/rniftyreg

An R interface to the NiftyReg medical image registration library

image-registration medical-imaging r transformations

Last synced: 30 Jan 2025

https://github.com/hollobit/aiml-in-medicine-club

Repository for "AI/MD in Medicine" club in clubhouse

ai bioinformatics clubhouse healthcare-ai machine-learning medical-ai medical-imaging

Last synced: 16 Jan 2025

https://github.com/ericspod/eidolon

Biomedical Visualization and Analysis Framework

3d-graphics biomedical brc data-analysis data-visualization dicom image-registration irtk king-college-london medical-image-computing medical-imaging mirtk nifti ogre3d pyqt4 python rendering visualization

Last synced: 07 Jan 2025

https://github.com/enet4/nifti-rs

Rust implementation of the NIfTI-1 format

hacktoberfest medical-imaging neuroimaging nifti nifti-format rust

Last synced: 27 Oct 2024

https://github.com/neuro-ml/amid

Awesome Medical Imaging Datasets

datasets medical-imaging python

Last synced: 30 Jan 2025

https://github.com/PantelisGeorgiadis/dcmjs-imaging

DICOM image and overlay rendering pipeline for Node.js and browser using the dcmjs library

dicom medical-imaging

Last synced: 19 Nov 2024

https://github.com/wenyalintw/dicom-viewer

An application displaying 2D/3D Dicom

3d-reconstruction dicom dicom-viewer image-processing medical-imaging

Last synced: 11 Nov 2024

https://github.com/ykuo2/dicom2jpg

A simple Python function tool to convert DICOM files into jpg/png/bmp/tiff files and numpy.ndarray

converter dicom dicom-files dicom-images image image-processing medical-image-processing medical-imaging

Last synced: 30 Oct 2024

https://github.com/davidssmith/dcemri.jl

DCE MRI analysis in Julia

analysis cancer-imaging-research dce-mri julia mat-files medical-image-processing medical-imaging

Last synced: 02 Nov 2024

https://github.com/ivmartel/dwv-angular

Medical image viewer using DWV (DICOM Web Viewer) and Angular.

angular dicom-web-viewer dwv medical-imaging

Last synced: 14 Oct 2024

https://github.com/ayaanzhaque/MultiMix

MultiMix: Sparingly Supervised, Extreme Multitask Learning From Medical Images (ISBI 2021, MELBA 2021)

deep-learning isbi-2021 medical-imaging melba multi-task-learning segmentation semi-supervised-learning

Last synced: 15 Nov 2024

https://github.com/borda/dataset-histology-landmarks

Dataset: landmarks for registration of histology images

anhir dataset histology image-registration landmarks medical-imaging

Last synced: 06 Jan 2025

https://github.com/lamyj/dicomifier

A medical image converter

bruker conversion dicom medical-imaging mri nifti

Last synced: 17 Nov 2024

https://github.com/niftypet/nipet

High-throughput PET image reconstruction with high quantitative accuracy and precision

analysis cuda gpu image-reconstruction medical-imaging mlem pet processing python

Last synced: 22 Jan 2025

https://github.com/ivmartel/dwv-jqmobile

Medical image viewer using DWV (DICOM Web Viewer) and jQuery Mobile.

dicom-web-viewer dwv jquery-mobile medical-imaging

Last synced: 14 Oct 2024

https://github.com/tureckova/Abdomen-CT-Image-Segmentation

The code for the paper Improving CT Image Tumor Segmentation Through Deep Supervision and Attentional Gates.

attention medical-imaging nnu-net segmentation

Last synced: 15 Nov 2024

https://github.com/hollobit/covid-19-ai

Collection of AI resources to fight against Coronavirus (COVID-19)

2019-ncov 2019-ncov-data 2019ncov 2019ncov-api ai artificial-intelligence corona coronavirus coronavirus-disease coronavirus-fight covid-19 covid-net covid19 covid19-data covid19-dataset deep-learning dl medical-imaging opendata sars-cov-2

Last synced: 16 Jan 2025

https://github.com/project-monai/monai-deploy-informatics-gateway

MONAI Deploy Informatics Gateway facilitates integration with DICOM compliant systems, enables ingestion of imaging data, helps triggering of workflows with the MONAI Deploy Workflow Manager and offers pushing the output to PACS systems.

ai csharp dicom dicomweb-client dotnet ehr emr fhir fhir-client fo-dicom healthcare medical-imaging

Last synced: 14 Nov 2024

https://github.com/ericspod/dicombrowser

Lightweight portable Dicom browser application

dicom dicom-browser dicom-images medical-imaging numpy pydicom pyqt4 pyqtgraph python

Last synced: 07 Jan 2025

https://github.com/gradienthealth/dicom-protos

Exploratory DICOM Protocol Buffer Representations and Generator

dicom medical-imaging production protobuf protocol-buffers

Last synced: 29 Jan 2025

https://github.com/asvcode/medicalimaging

Tutorials that take an in depth look at how to view and manipulate DICOM images and how to get them ready for machine learning

dicom dicom-images health medical-images medical-imaging

Last synced: 31 Oct 2024

https://github.com/dalmia/brain-tumor-segmentation-keras

Keras implementation of the multi-channel cascaded architecture introduced in the paper "Brain Tumor Segmentation with Deep Neural Networks"

convolutional-neural-networks deep-learning keras medical-imaging python

Last synced: 30 Oct 2024

https://github.com/gattia/cycpd

Cython implementation of Coherent Point Drift (CPD)

cpd cython image-processing medical-imaging point-cloud python registration

Last synced: 16 Nov 2024

https://github.com/nsmfoo/dicompot

DICOM Honeypot

deception dicom docker go honeypot medical medical-imaging

Last synced: 02 Nov 2024

https://github.com/aican-research/h2g-net

🚀 H2G-Net: Segmentation of breast cancer region from whole slide images

agu-net breast-cancer clustering cnn computational-pathology convolutional-neural-networks deep-learning digital-pathology h2g-net medical-imaging mobilenetv2 refinement segmentation tensorflow tensorflow-keras u-net whole-slide-image

Last synced: 10 Nov 2024

https://github.com/jacobhinkle/lagomorph

Image Registration and Computational Anatomy in PyTorch

computer-vision deep-learning image-registration medical-imaging pytorch

Last synced: 29 Oct 2024

https://github.com/bhklab/ptl-oar-segmentation

Boilerplate for PyTorch Lightning based medical-image segmentation pipeline for to enable automated segmentation of organs-at-risk (in head and neck cancer) by using Simple Open-Source 3D CNNS

convolutional-neural-networks deep-learning medical-imaging monai open-source pytorch pytorch-lightning pytorchlightning segmentation

Last synced: 08 Nov 2024

https://github.com/mertyildiran/dermatron

Dermatology focused medical records software, augmented with computer vision and artificial intelligence [Meteor packaged with Electron]

dermatology javascript medical medical-image-processing medical-imaging meteor

Last synced: 08 Nov 2024

https://github.com/radtorch/radtorch

Official repository for RADTorch - The Medical Imaging Machine Learning Framework

ai classification convolutional-neural-networks deep-learning dicom gpu image-classification image-classifier kit machine machine-learning medical-imaging neural-networks pydicom python pytorch radiology radiology-machine-learning rsna sklearn

Last synced: 10 Oct 2024

https://github.com/SLAMPAI/large-scale-pretraining-transfer

Code for reproducing the experiments on large-scale pre-training and transfer learning for the paper "Effect of large-scale pre-training on full and few-shot transfer learning for natural and medical images" (https://arxiv.org/abs/2106.00116)

big-transfer chest-x-ray14 chest-xray-images chexpert-dataset covidx-dataset deep-learning distributed-training few-shot-learning fine-tuning imagenet large-scale-learning medical-imaging mimic-cxr padchest-dataset pre-trained-model pre-training pytorch scaling-laws supercomputing transfer-learning