AwesomeGenomics
Cancer Data Science's go to place for excellent genomics tools and packages
https://github.com/broadinstitute/AwesomeGenomics
Last synced: about 3 hours ago
JSON representation
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Awesome awesomeness
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Computational
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Worklow Management
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Dataset Management
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Neat python
- Selene - level deep learning networks
- nbstripout
- voila
- SublimeJEDI
- functional-python
- plot in your terminal
- Itrask
- ngrock
- python parser
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Other
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python Basics
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Genomics
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read mapper
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Mutations
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Expression
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Single Cell
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Epigenomics
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Expression
- crazyhottommy's repo
- pyGenomeTracks - Epigenomics data
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ChIPseq and related
- MACS2
- EPIC2
- RSEG
- coda
- CREAM
- ngsplot
- epi-corr
- SUPERmerge - seq read pileup analysis and annotation algorithm for investigating alignment (BAM) files of diffuse histone modification ChIP-seq datasets with broad chromatin domains at a single base pair resolution level
- nf-core/chipseq
- pyBigWig
- deepTools
- EnrichedHeatmap
- DeeperBind
- Basenji
- ABC model - gene links
- MACS2 diff binding
- DeepBind
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HiCseq and related
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Programming Languages
Sub Categories
Keywords
python
14
awesome
8
bioinformatics
7
awesome-list
6
data-science
5
machine-learning
5
jupyter-notebook
4
chip-seq
4
deep-learning
4
indels
3
genomics
3
snvs
2
ngs
2
jupyter
2
data-visualization
2
visualization
2
tensorflow
2
clustering
2
rna-seq
2
jupyterlab-extension
2
atac-seq
2
dashboarding
1
functional-programming
1
command-line
1
nbstripout
1
autotrust
1
sampling-methods
1
genomic-data-analysis
1
simulation
1
quantum-chemistry
1
python-chemistry
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molecular-dynamics
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interpretable-ml
1
interpretable-machine-learning
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interpretable-ai
1
interpretability
1
fairness
1
explainable-ml
1
ai-safety
1
tensorflow-tutorials
1
self-driving-cars
1
segmentation
1
neural-networks
1
mit
1
jupyter-notebooks
1
deeplearning
1
deep-rl
1
deep-reinforcement-learning
1
artificial-intelligence
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plot
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