Projects in Awesome Lists tagged with metatranscriptomics
A curated list of projects in awesome lists tagged with metatranscriptomics .
https://github.com/sortmerna/sortmerna
SortMeRNA: next-generation sequence filtering and alignment tool
alignment bioinformatics cpp metatranscriptomics ngs python sequencing
Last synced: 06 Apr 2025
https://github.com/soedinglab/plass
sensitive and precise assembly of short sequencing reads
bioinformatics metagenomics metatranscriptomics opensource proteins proteomics sequence-assembler
Last synced: 04 Apr 2025
https://github.com/nbisweden/contigtax
Taxonomic classification of metagenomic contigs
metagenomics metatranscriptomics sequence-analysis taxonomy-assignment
Last synced: 05 Mar 2025
https://github.com/microbiomedata/metat
Metatranscriptomics workflow
metatranscriptomics transcriptomics workflow
Last synced: 27 Oct 2025
https://github.com/raw-lab/metaome_stats
Statistical package for metaome denovo assembly results.
fasta genome metagenome metagenome-assembly metaome-stats metatranscriptomics transcriptomics
Last synced: 16 Jan 2026
https://github.com/erikrikarddaniel/magmap
Nextflow (nf-core) workflow for mapping reads to large collections of genomes.
bbmap metagenomics metatranscriptomics nextflow nf-core
Last synced: 20 Jan 2026
https://github.com/dienerlab/pipelines
A monorepo containing all of our Nextflow pipelines.
metagenomics metatranscriptomics microbiome nextflow
Last synced: 02 Jun 2026
