Projects in Awesome Lists tagged with reproduction-code
A curated list of projects in awesome lists tagged with reproduction-code .
https://github.com/blackhc/batchbald
Efficient and Diverse Batch Acquisition for Deep Bayesian Active Learning.
activelearning deep-learning machine-learning reproduction-code
Last synced: 07 Apr 2025
https://github.com/dohlee/spliceai-pytorch
Implementation of SpliceAI, Illumina's deep neural network to predict variant effects on splicing, in PyTorch.
artificial-intelligence bioinformatics biology computational-biology deep-learning deep-neural-networks reproduction reproduction-code splicing variant-effect-prediction
Last synced: 29 Apr 2025
https://github.com/dohlee/abyssal-pytorch
Implementation of Abyssal, a deep neural network trained with a new "mega" dataset to predict the impact of an amino acid variant on protein stability.
bioinformatics biology computational-biology deep-learning protein protein-language-model protein-sequences protein-stability reproduction reproduction-code
Last synced: 29 Apr 2025
https://github.com/corybrunson/triadic
replicable code for "Triadic analysis of affiliation networks"
Last synced: 13 Apr 2025
https://github.com/dohlee/tranception-pytorch
Implementation of Tranception, a SOTA transformer model for protein fitness prediction, in PyTorch.
bioinformatics biology computational-biology deep-learning protein-sequences reproduction reproduction-code
Last synced: 29 Apr 2025
https://github.com/dohlee/bpnet-pytorch
Implementation of BPNet, a base-resolution convolutional neural network for transcription-factor binding prediction, in PyTorch.
bioinformatics biology computational-biology deep-learning reproduction reproduction-code transcription-factor-binding
Last synced: 27 Feb 2025
https://github.com/corybrunson/coauthor
coauthorship incidence and growth in biomedical research
Last synced: 29 Mar 2025
https://github.com/r0maink/greedy-infomax
Reproduction code for "Putting An End to End-to-End: Gradient-Isolated Learning of Representations"
machine-learning python3 pytorch reproduction-code self-supervised
Last synced: 19 Feb 2025
https://github.com/dohlee/eve-pytorch
Implementation of evolutionary model of variant effect (EVE), a deep generative model of evolutionary data, in PyTorch.
bioinformatics biology computational-biology deep-learning evolution reproduction reproduction-code variant-effect-prediction variational-autoencoder
Last synced: 27 Feb 2025
https://github.com/corybrunson/narchd
bibliographic data and scientometric analysis for a systematic review of network analyses of routinely collected healthcare datasets
Last synced: 29 Mar 2025