https://github.com/mouseland/cellpose

a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

cell-biology cell-segmentation segmentation

Last synced: 13 May 2025

https://github.com/MouseLand/cellpose

a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

cell-biology cell-segmentation segmentation

Last synced: 02 Apr 2025

https://github.com/mouseland/kilosort

Fast spike sorting with drift correction

electrophysiology neuroscience spike-sorting

Last synced: 14 May 2025

https://github.com/MouseLand/Kilosort

Fast spike sorting with drift correction for up to a thousand channels

electrophysiology neuroscience spike-sorting

Last synced: 16 Apr 2025

https://github.com/mouseland/suite2p

cell detection in calcium imaging recordings

data-analysis imaging neuroscience

Last synced: 06 Oct 2025

https://github.com/MouseLand/suite2p

cell detection in calcium imaging recordings

data-analysis imaging neuroscience

Last synced: 07 May 2025

https://github.com/mouseland/rastermap

a visualization method for neural data

neuroscience neuroscience-methods unsupervised-clustering

Last synced: 15 May 2025

https://github.com/mouseland/facemap

Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes singular value decomposition (SVD) of behavioral videos.

behavior deep-learning gui matlab-gui movie neuroscience pose-estimation pupil python pytorch rodents

Last synced: 08 Apr 2025

https://github.com/mouseland/stringer-pachitariu-et-al-2018b

Responses of 10,000 neurons to 2,800 natural images

neuroscience openscience vision-science

Last synced: 02 Mar 2026

https://github.com/mouseland/cellpose-napari

napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool

napari segmentation

Last synced: 05 Apr 2025

https://github.com/mouseland/pykilosort

WIP: Python port of Kilosort2

Last synced: 26 Jun 2025

https://github.com/mouseland/stringer-pachitariu-et-al-2018a

Recordings of 10k neurons during spontaneous behaviors

neuroscience openscience

Last synced: 10 Jul 2025

https://github.com/mouseland/stringer-et-al-2019

paper figure code

Last synced: 08 Apr 2025

https://github.com/mouseland/neuropop

analysis tools for large-scale neural recordings

Last synced: 08 Apr 2025

https://github.com/mouseland/receptivefield-explorer

GUI to compute and explore receptive fields, primarily from calcium imaging recordings

Last synced: 08 Apr 2025

https://github.com/mouseland/ensemblepursuit

Last synced: 26 Jul 2025

https://github.com/mouseland/pachitariu-et-al-2018a

Benchmarking spike deconvolution without ephys

Last synced: 24 Jan 2026

https://github.com/mouseland/steinmetz2019_nma

Last synced: 08 Apr 2025

https://github.com/mouseland/course-materials

Last synced: 08 Apr 2025

https://github.com/mouseland/facemap-napari

napari plugin for facemap (www.github.com/mouseland/facemap) for processing behavioral data

Last synced: 14 May 2025

https://github.com/mouseland/cellpose_web

code for cellpose website

Last synced: 13 Jun 2025

https://github.com/mouseland/zhong-et-al-2025

code to make figures from Zhong et al, 2025

Last synced: 21 Jul 2025

https://github.com/mouseland/critical_init

code for Pachitariu et al 2025

Last synced: 08 May 2025

https://github.com/mouseland/mouseland.github.io

website for Pachitariu-Stringer lab

Last synced: 12 Jul 2025

https://github.com/mouseland/cellpose_dev

dev version for cellposeSAM dev

Last synced: 08 May 2025

https://github.com/mouseland/minimodel

minimodels!

Last synced: 08 May 2025

https://github.com/mouseland/kesa-et-al-2019

Last synced: 14 May 2025