Projects in Awesome Lists by ReproNim
A curated list of projects in awesome lists by ReproNim .
https://github.com/repronim/neurodocker
Generate custom Docker and Singularity images, and minimize existing containers
apptainer containers docker dockerfile linux neuroscience nipype reproducible-research science singularity-container
Last synced: 16 May 2025
https://github.com/ReproNim/neurodocker
Generate custom Docker and Singularity images, and minimize existing containers
apptainer containers docker dockerfile linux neuroscience nipype reproducible-research science singularity-container
Last synced: 02 May 2025
https://github.com/repronim/reproin
A setup for automatic generation of shareable, version-controlled BIDS datasets from MR scanners
Last synced: 03 Apr 2025
https://github.com/ReproNim/reproin
A setup for automatic generation of shareable, version-controlled BIDS datasets from MR scanners
Last synced: 29 Sep 2025
https://github.com/repronim/brainverse
BrainVerse is an electronic laboratory notebook built as an open-source, cross-platform desktop application to help researchers manage, track and share information in a comprehensive format.
Last synced: 13 Apr 2025
https://github.com/ReproNim/brainverse
BrainVerse is an electronic laboratory notebook built as an open-source, cross-platform desktop application to help researchers manage, track and share information in a comprehensive format.
Last synced: 04 Apr 2025
https://github.com/ReproNim/containers
Containers "distribution" for reproducible neuroimaging
Last synced: 02 May 2025
https://github.com/repronim/containers
Containers "distribution" for reproducible neuroimaging
Last synced: 09 Apr 2025
https://github.com/repronim/reproman
ReproMan (AKA NICEMAN, AKA ReproNim TRD3)
Last synced: 28 Aug 2025
https://github.com/repronim/reproschema
A standardized form generation and data collection schema to harmonize results by design across projects.
clinical-assessments interoperability schema standardizing-assessments
Last synced: 13 Apr 2025
https://github.com/repronim/howwouldrepronim
Sphinx for rendering the "How Would ReproNim Do That?" series of documents
Last synced: 10 Aug 2025
https://github.com/repronim/simple_workflow
A very simple, re-executable neuroimaging publication (code)
docker docker-image neurodebian neuroimaging reproducibility reproducible-science
Last synced: 01 Sep 2025
https://github.com/repronim/reproseed
A POSIX shell script to assist in guaranteeing reproducible non-deterministic computation(s)
Last synced: 24 Jul 2025
https://github.com/ReproNim/simple_workflow
A very simple, re-executable neuroimaging publication (code)
docker docker-image neurodebian neuroimaging reproducibility reproducible-science
Last synced: 02 May 2025
https://github.com/repronim/module-reproducible-basics
Module 0: Reproducible Basics
Last synced: 13 Apr 2025
https://github.com/repronim/reprostim
Automated capture of audio-visual stimuli into BIDS datasets
neuroimaging psychology reproducible-research
Last synced: 13 Apr 2025
https://github.com/repronim/testkraken
Generalized regression testing of scientific workflows
Last synced: 13 Apr 2025
https://github.com/repronim/reproschema-ui
UI to render ReproSchema based protocols and assessments.
Last synced: 09 Apr 2025
https://github.com/repronim/ohbmeducation-2022
Repo for the OHBM Education 1/2 day course entitled: "How to Write a Re-Executable Publication"
Last synced: 09 Apr 2025
https://github.com/repronim/reproinventory
A repo for developing the ReproNim inventory of training resources.
Last synced: 09 Apr 2025
https://github.com/repronim/coco2019-training
Training materials for the ReproNim day at https://coastal-coding.github.io
Last synced: 13 Apr 2025
https://github.com/repronim/semanticcbcl
An ABCD-ReproNim project to prototype methods and procedures for handling (restricted) ABCD data using NIDM to create a ReproPond that can be integrated with similar data from other sources. We will use the Child Behavior Checklist (CBCL) as a test case, but the results should be generalizable to any NDA-hosted data schema.
Last synced: 30 Jul 2025
https://github.com/repronim/sfn2018-training
Materials for SfN 2018 training event
Last synced: 13 Apr 2025
https://github.com/repronim/how-would-repronim-4
Companion notebook to "How would ReproNim" Volume 4
Last synced: 20 Jun 2025
https://github.com/repronim/dgpa_workshop_2022
The repository for the ReproNim "Reproducible Neuroimaging" workshop, organized and conducted for the DGPA in spring 2022.
Last synced: 13 Apr 2025
https://github.com/repronim/openneurolab-metasearch-dataset
DataLad (git-annex) dataset containing neuroimaging data used by https://github.com/OpenNeuroLab/metasearch
Last synced: 09 Apr 2025
https://github.com/repronim/reprotube
Collection (git-annex/DataLad dataset) of educational videos
Last synced: 09 Apr 2025
https://github.com/repronim/segstats_jsonld
Script to Export Freesurfer-based Parcellation/Segmentation Stats and Provenance as JSON-LD and NIDM
Last synced: 13 Apr 2025
https://github.com/repronim/module-dataprocessing
A module for reproducible data processing
Last synced: 13 Apr 2025
https://github.com/repronim/stuff2nidm
Repo for the process of adding "stuff" (ie the results of fmriprep, etc. processing) to the NIDM graph.
Last synced: 02 Jul 2025
https://github.com/repronim/reprostories
A location to hold potential RerpNim How would you solve simple things ideas and drafts. Perhaps they will graduate into the official ReproNim How Would document...
Last synced: 27 Jun 2025
https://github.com/repronim/workflowcomparison
The git repo for the workflow comparison project.
Last synced: 15 Sep 2025
https://github.com/repronim/reproflow-data-sync
DataLad dataset with all samples of recorded "ReproEvents", "ReproStim", etc data for purpose of calibration and establishing processing
Last synced: 27 Jul 2025
https://github.com/repronim/reproflow
Materials for ReproFlow: ReproNim tools to establish scalable and automated MRI and behavioral data acquisition and QC
Last synced: 06 Aug 2025
https://github.com/repronim/reproin-publications
Poster and publications for ReproIn
Last synced: 11 Aug 2025
https://github.com/repronim/repromon
A service to monitor data acquisition etc to alert if anything goes wrong
Last synced: 25 Aug 2025
https://github.com/repronim/reproschema-demo
A demo for the reproschema paper
Last synced: 26 Aug 2025
https://github.com/repronim/fsl_seg_to_nidm
Converts structural segmentation outputs from FSL's FIRST and FAST tool to NIDM
Last synced: 09 Apr 2025
https://github.com/repronim/abcd-redcap2rs
Converting ABCD REDCap data dictionary to ReproSchema
Last synced: 09 Apr 2025
https://github.com/repronim/how-would-repronim-1
Companion notebook for "How would ReproNim" Volume 1
Last synced: 09 Apr 2025
https://github.com/repronim/ants_seg_to_nidm
ANTS-based structural segmentation exporter to NIDM
Last synced: 12 Jun 2025
https://github.com/repronim/brainhack_ohbm18
materials for ReproNim part of TrainTrack
Last synced: 04 Jul 2025
https://github.com/repronim/probable-journey
Interactive agents for science
Last synced: 09 Apr 2025
https://github.com/repronim/reproschema-protocol-cookiecutter
A cookiecutter for reproschema protocols.
Last synced: 09 Apr 2025
https://github.com/repronim/reproschema-demo-protocol
A demo protocol for the ReproSchema paper
Last synced: 09 Apr 2025
https://github.com/repronim/hbcd-loris2reproschema
HBCD LORIS format to ReproSchema format
Last synced: 09 Apr 2025
https://github.com/repronim/test-hpc-cluster
[UNDER CONSTRUCTION] Setup(s) to spin off HPC clusters playgrounds for testing.
Last synced: 09 Apr 2025
https://github.com/repronim/reprolake-misc
Centralization of the issues discovered with reprolake prototypes etc
Last synced: 09 Apr 2025
https://github.com/repronim/simpletutorial
The ultra-simple ReproNim simple tutorial.
Last synced: 09 Apr 2025
https://github.com/repronim/reproman-slurm
Container images for ReproMan & slurm CI
Last synced: 09 Apr 2025
https://github.com/repronim/antspy-docker
Working with a dockerfile setup for antspy
Last synced: 09 Apr 2025
https://github.com/repronim/module-intro
Module i: An Introduction to Reproducible Neuroimaging training module
Last synced: 09 Apr 2025
https://github.com/repronim/carmin-cmdline-demo
A demo for CARMIN API if implemented for cmdline in bash (just a prototype ATM)
Last synced: 09 Apr 2025
https://github.com/repronim/reproshell
Shell (bash only ATM) configuration to facilitate reproducible research
Last synced: 20 Jun 2025
https://github.com/repronim/abcd-apps
abcd-apps from BrainLife -- just a DataLad superdataset to catalog them all
Last synced: 09 Apr 2025
https://github.com/repronim/datalad-nda
Playground for scripts to ease working with NDA via DataLad
Last synced: 09 Apr 2025
https://github.com/repronim/demo-protocol
an example protocol which serves as default protocol in schema-ui
Last synced: 13 Apr 2025
https://github.com/repronim/reproschema-builder
a javascript library to build reproschema activity-set and corresponding activities
Last synced: 13 Apr 2025