Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
Projects in Awesome Lists by csoneson
A curated list of projects in awesome lists by csoneson .
https://github.com/csoneson/armor
Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data
Last synced: 06 Jan 2025
https://github.com/csoneson/conquer_comparison
Code for evaluation of differential expression methods in single-cell RNA-seq data
Last synced: 06 Jan 2025
https://github.com/csoneson/exploremodelmatrix
Explore design matrices interactively with R/Shiny
Last synced: 06 Jan 2025
https://github.com/csoneson/alevinqc
Create QC and summary reports for Alevin output
Last synced: 06 Jan 2025
https://github.com/csoneson/countsimqc
countsimQC - Compare characteristic features of count data sets
Last synced: 06 Jan 2025
https://github.com/csoneson/rna_velocity_quant
Evaluation of the effect of quantification choices on RNA velocity estimates
Last synced: 06 Jan 2025
https://github.com/csoneson/nativernaseqcomplextranscriptome
Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"
Last synced: 06 Jan 2025
https://github.com/csoneson/icobra
Interactive benchmarking of ranking and assignment methods
Last synced: 06 Jan 2025
https://github.com/csoneson/iCOBRA
Interactive benchmarking of ranking and assignment methods
Last synced: 04 Dec 2024
https://github.com/csoneson/dreval
Convenience functions to evaluate reduced dimension representations in SingleCellExperiment objects
Last synced: 06 Jan 2025
https://github.com/csoneson/jcc
R package to calculate junction coverage compatibility (JCC) scores
Last synced: 06 Jan 2025
https://github.com/csoneson/duoclustering2018
R package with data sets and clustering results from Duò et al (F1000Research 2018)
Last synced: 06 Jan 2025
https://github.com/csoneson/tabulamurisdata
Access data from Tabula Muris Consortium via R/Bioconductor
Last synced: 06 Jan 2025
https://github.com/csoneson/scvelor
R wrapper around the scVelo python package (https://scvelo.readthedocs.io/)
Last synced: 06 Jan 2025
https://github.com/csoneson/velociraptor_package_list
Generate package list for velociraptor
Last synced: 06 Jan 2025
https://github.com/csoneson/rnaseqworkflow_exampledata
Example data for RNA-seq workflow
Last synced: 06 Jan 2025
https://github.com/csoneson/bioc-shiny-examples
Examples of shiny apps from Bioconductor packages
Last synced: 06 Jan 2025