Projects in Awesome Lists by dfornika
A curated list of projects in awesome lists by dfornika .
https://github.com/dfornika/rosalind
My solutions to the bioinformatics problem set at rosalind.info
Last synced: 11 Apr 2025
https://github.com/dfornika/core-typer
A Core Genome MLST (cgMLST) Typing Tool
core-genome microbial-genomics sequence-typing
Last synced: 18 Mar 2025
https://github.com/dfornika/intro_to_cybernetics
A computational scratchpad for working through some exercises in An Introduction to Cybernetics by W. Ross Ashby
cybernetics personal-study-notes
Last synced: 18 Mar 2025
https://github.com/dfornika/miseq-samplesheet-parser
Parse illumina MiSeq SampleSheet.csv files and convert to JSON
bioinformatics illumina miseq next-generation-sequencing
Last synced: 18 Mar 2025
https://github.com/dfornika/tree-with-metadata
Draw a phylogenetic tree, along with a table of metadata
metadata phylogenetic-tree phylogenetics visualization
Last synced: 18 Mar 2025
https://github.com/dfornika/vipr-client
Client for downloading sequence data from the Virus Pathogen Resource (ViPR)
Last synced: 18 Mar 2025
https://github.com/dfornika/aa-table-with-af
Convert a .vcf file to 'aa_table.tsv', including depth & alt frequency info
Last synced: 18 Mar 2025
https://github.com/dfornika/illumina-run-simulator
Tool to help test & develop fastq symlinking service
Last synced: 18 Mar 2025
https://github.com/dfornika/table_salad
Convert a .csv table to a SALAD schema
Last synced: 18 Mar 2025
https://github.com/dfornika/simulate-genomes
Simulate genomic variation, based on input reference genomes
bioinformatics-pipeline data-simulation microbial-genomics
Last synced: 18 Mar 2025
https://github.com/dfornika/chass-queen
Experimenting with (basic) chess engine
Last synced: 18 Mar 2025
https://github.com/dfornika/core-typer-nf
Nextflow pipeline for running the core-typer cgMLST tool
Last synced: 12 Mar 2025
https://github.com/dfornika/witchcraft-scratchpad
Scratchpad for learning the lambdaisland/witchcraft library for controlling Minecraft from Clojure
Last synced: 18 Mar 2025
https://github.com/dfornika/rrna-16s-analysis-service-fastapi
Prototype of a web-based 16S analysis server
Last synced: 18 Mar 2025
https://github.com/dfornika/watch-and-tar-clj
Watch directories and automatically tar.gz them.
Last synced: 18 Mar 2025
https://github.com/dfornika/sra-fetch-metadata
Fetch metadata for an NCBI SRA BioProject.
api-client bioinformatics genomics metadata
Last synced: 18 Mar 2025
https://github.com/dfornika/oidc-auth-test
Demo for authentication against OIDC provider
authentication clojurescript openid-connect
Last synced: 18 Mar 2025
https://github.com/dfornika/primers_to_amplicons
Convert primer scheme bedfiles to amplicon bedfiles
Last synced: 18 Mar 2025
https://github.com/dfornika/sequencing-runs-service-clj
Clojure implementation of Sequencing Runs Service
Last synced: 18 Mar 2025
https://github.com/dfornika/scanner
A Scanner based on the book "Crafting Interpreters" by Robert Nystrom
Last synced: 18 Mar 2025
https://github.com/dfornika/exercism
Solutions for exercism.io exercises
exercises exercism-solutions katas practice-programming
Last synced: 18 Mar 2025
https://github.com/dfornika/kma-match-ref
Use the kma aligner to choose the best reference from a multi-fasta database
Last synced: 18 Mar 2025
https://github.com/dfornika/github-workshop
Testing & Training Repo For Demonstrating GitHub Workflows
Last synced: 18 Mar 2025
https://github.com/dfornika/genomics-qc-site-demo
A demo website for displaying genomics quality control data
Last synced: 18 Mar 2025
https://github.com/dfornika/ontologized-declarative-domain-modeling
Experiment in using OWL ontologies for Declarative Domain Modeling
Last synced: 18 Mar 2025
https://github.com/dfornika/ncov-db
Store SARS-CoV-2 genomic analysis results from ncov2019-artic-nf and ncov-tools to a sqlite DB
data-management extract-transform-load sars-cov-2 sqlite
Last synced: 18 Mar 2025
https://github.com/dfornika/cljs-starter-figwheel
Template to start clojurescript projects, for personal use
Last synced: 18 Mar 2025
https://github.com/dfornika/simple-plots
Scripts for generating quick & simple plots for exploratory analysis.
Last synced: 18 Mar 2025
https://github.com/dfornika/pangolin-simple
Simple nextflow pipeline for running pangolin
Last synced: 18 Mar 2025