https://github.com/jackhump/leafviz

Just the leafviz parts of Leafcutter

Last synced: 18 Jan 2026

https://github.com/jackhump/wgs-qc-pipeline

A Snakemake pipeline for Quality Control of Whole Genome Sequencing data

snakemake wgs

Last synced: 18 Jan 2026

https://github.com/jackhump/sqtlviztools

functions for sQTL visualisation

Last synced: 18 Jan 2026

https://github.com/jackhump/als_spinalcord_qtls

Data Portal for NYGC ALS Spinal Cord

Last synced: 18 Jan 2026

https://github.com/jackhump/psp_gwas

Functional Genomics on the PSP GWAS

Last synced: 18 Jan 2026

https://github.com/jackhump/cryptex

Scripts used to discover and quantify non-annotated cryptic splicing in RNA-seq data

Last synced: 18 Jan 2026

https://github.com/jackhump/fus_intron_retention

Scripts written for the FUS NLS mutation comparison with FUS KO project

Last synced: 18 Jan 2026

https://github.com/jackhump/ftld-tdp_analysis

"All code written for Transcriptomic analysis of frontotemporal lobar degeneration with TDP-43 pathology reveals cellular alterations across multiple brain regions"

Last synced: 18 Jan 2026

https://github.com/jackhump/featuremaps

An R package for creating sophisticated plots of genomic intersections.

Last synced: 18 Jan 2026

https://github.com/jackhump/stanford_brain_work

Work in the Pritchard Lab at Stanford, CA

Last synced: 18 Jan 2026

https://github.com/jackhump/splicing_fidelity

Last synced: 18 Jan 2026

https://github.com/jackhump/learning_web_dev

Stuff I worked on for a Web Development course in June 2017

Last synced: 18 Jan 2026

https://github.com/jackhump/jacktools

a set of scripts for stupid things I have to do regularly. Mostly just a wrapper for BedTools.

Last synced: 18 Jan 2026

https://github.com/jackhump/fidelio

assessing spliceosome fidelity from RNA-seq junction reads

Last synced: 18 Jan 2026

https://github.com/jackhump/hnrnpk

All code written for hnRNPK manuscript

Last synced: 18 Jan 2026

https://github.com/jackhump/misc_scripts

Last synced: 18 Jan 2026

https://github.com/jackhump/jackhump.github.io

Personal website

Last synced: 18 Jan 2026

https://github.com/jackhump/cmc_sqtlviz

Visualising LeafCutter sQTLs found in the CommonMind Consortium (CMC) brain dataset

Last synced: 18 Jan 2026

https://github.com/jackhump/rosmap_sqtlviz

Visualising LeafCutter sQTLs found in the ROSMAP brain dataset

Last synced: 18 Jan 2026

https://github.com/jackhump/long_genes

where I keep my long genes scripts

Last synced: 18 Jan 2026

https://github.com/jackhump/opthalmology_work

Work for the UCL Institute of Opthalmology

Last synced: 18 Jan 2026

https://github.com/jackhump/two_tdp-43_mutant_mice

scripts written for Fratta et al "Endogenous TDP-43 mutant mice have novel gain of splicing function and ALS characteristics in vivo"

Last synced: 18 Jan 2026

https://github.com/jackhump/phd_thesis

My thesis - due for submission in November 2018

Last synced: 18 Jan 2026