Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
Projects in Awesome Lists by jefferis
A curated list of projects in awesome lists by jefferis .
https://github.com/jefferis/nabor
R package wrapping libnabo: fast K Nearest Neighbor search for low dimensions
libnabo nearest-neighbors r r-package
Last synced: 28 Oct 2024
https://github.com/jefferis/gphys
R package to analyse electrophysiology data acquired by Neuromatic / Igor Pro
analysis electrophysiology igor r
Last synced: 28 Oct 2024
https://github.com/jefferis/fiji-cmtk-gui
Simple GUI frontend for CMTK image registration tools in Fiji/ImageJ
Last synced: 11 Oct 2024
https://github.com/jefferis/cmtk
Unofficial git clone of Computational Morphometry Toolkit (CMTK)
Last synced: 28 Oct 2024
https://github.com/jefferis/readobj
R package providing fast reader for Wavefront OBJ 3D scene files
3d-models r rgl tinyobjloader wavefront-obj
Last synced: 11 Oct 2024
https://github.com/jefferis/igorr
R package to load Igor Pro waves (ibw) and experiment files (pxp) in R
electrophysiology igor neuromatic pro r
Last synced: 28 Oct 2024
https://github.com/jefferis/analysissuite
R Neuron Analysis Suite provides functions to read/write/analyse neuroanatomical data
Last synced: 11 Oct 2024
https://github.com/jefferis/pic2nifti
Simple conversion from Biorad PIC to nifti for use with DTI-TK quicklook plugin
Last synced: 11 Oct 2024
https://github.com/jefferis/euref2petition
Data and code to analyses the EU 2nd referendum petition (http://petition.parliament.uk/petitions/131215)
Last synced: 11 Oct 2024
https://github.com/jefferis/gold_trainingsubset_79_all
BigNeuron gold training set + initial automated reconstructions.
Last synced: 11 Oct 2024
https://github.com/jefferis/flylight
Functions for working with Janelia FlyLight confocal images
Last synced: 11 Oct 2024
https://github.com/jefferis/vfbr
R Package to Access the Virtual Fly Brain project API
drosophila neuronanatomy r virtualflybrain
Last synced: 28 Oct 2024
https://github.com/jefferis/hxnrrdio
a library for Amira 3d Visulisation Software to read/write data in the Nrrd Image format
Last synced: 11 Oct 2024
https://github.com/jefferis/analysissuitebin
These are additional perl/shell scripts that are intended to support my AnalysisSuite package
Last synced: 11 Oct 2024
https://github.com/jefferis/rann2
Fast Nearest Neighbour Search (Rcpp wrapper for libANN)
Last synced: 11 Oct 2024
https://github.com/jefferis/manifoldreduction
Manifold Dimension Reduction after Chigirev and Bialek
Last synced: 11 Oct 2024
https://github.com/jefferis/packagedevelopmenttaskview
[Task View]: R "PackageDevelopment" Task View
Last synced: 11 Oct 2024
https://github.com/jefferis/nat.ants
Bridge neuroanatomy toolbox ('nat') and 'ANTs' registration tools
image-registration itk neuroanatomy-toolbox r r-package
Last synced: 11 Oct 2024
https://github.com/jefferis/plyxsystem
A method of using python scripts to manipulate the current document in LyX.
Last synced: 11 Oct 2024
https://github.com/jefferis/neura
Fork of NeuRA Neural Reconstructions Algorithms
Last synced: 11 Oct 2024
https://github.com/jefferis/bmp
A simple R package to read Windows BMP format images
Last synced: 11 Oct 2024
https://github.com/jefferis/fmfio
R package to read the 'FlyMovieFormat' (fmf) video format
Last synced: 11 Oct 2024
https://github.com/jefferis/bigneuronimperial
Some analysis associated with the BigNeuron hackathon at Imperial College Jan 2016
Last synced: 11 Oct 2024
https://github.com/jefferis/pnvisualisationinamira
Examples of how to visualise groups of Projection Neurons in Amira
Last synced: 11 Oct 2024
https://github.com/jefferis/rimagej
Clone of RImageJ that bridges ImageJ image processing software and R statistical environment
Last synced: 11 Oct 2024
https://github.com/jefferis/micromanager12extras
Some code built on top of the micromanager 1.2 tree that improved dc1394 support and added a LabJack driver
Last synced: 11 Oct 2024
https://github.com/jefferis/scanimage
read and analyse 2 photon images from ScanImage
2-photon image-processing imagej r scanimage
Last synced: 11 Oct 2024
https://github.com/jefferis/shinyxform
A Shiny/R webapp to transform points between different reference brain spaces
Last synced: 11 Oct 2024
https://github.com/jefferis/jefferis.github.io
user level github pages site
Last synced: 11 Oct 2024
https://github.com/jefferis/r-natverse
Batteries included docker image for full natverse
docker-image natverse neuroanatomy neuroanatomy-toolbox neuroscience r rstudio
Last synced: 11 Oct 2024
https://github.com/jefferis/morgenstemning
Colorblind-safe color maps for R
Last synced: 11 Oct 2024
https://github.com/jefferis/frulhns
R package frulhns to accompany "A bidirectional circuit switch reroutes pheromone signals in male and female brains"
Last synced: 11 Oct 2024
https://github.com/jefferis/nat.amira
Interface Between NeuroAnatomy Toolbox and Amira Visualisation Software
amira nat neuroanatomy neuroanatomy-toolbox r
Last synced: 11 Oct 2024
https://github.com/jefferis/brainbaser
Programmatic Access to the Brainbase Drosophila Neuroanatomy Website
Last synced: 11 Oct 2024
https://github.com/jefferis/fafbsegdata
Additional version data to accompany fafbseg data
Last synced: 11 Oct 2024
https://github.com/jefferis/rflyem
Tools for working with Janelia FlyEM data
Last synced: 11 Oct 2024
https://github.com/jefferis/kohl2015latex
Latex version of Current Opinion article written by Kohl, Huoviala and Jefferis.
Last synced: 11 Oct 2024
https://github.com/jefferis/testlazyneuronlist
Testing lazy data load strategies for 'neuronlists'
Last synced: 11 Oct 2024
https://github.com/jefferis/razip
Efficient Random Access to R Objects Stored in Large Zip Files
Last synced: 11 Oct 2024
https://github.com/jefferis/pkgusingigraph
A test package to highlight problems setting igraph options
Last synced: 11 Oct 2024
https://github.com/jefferis/nm-gj
Neuromatic/NClamp with Greg's personal extensions
Last synced: 11 Oct 2024
https://github.com/jefferis/osb_vfb_showcase
Showcase of some Drosophila melanogaster neuronal morphologies processed by Virtual Fly Brain.
Last synced: 11 Oct 2024
https://github.com/jefferis/cmtkr
R wrapper package for the Computational Morphometry Toolkit (CMTK)
Last synced: 11 Oct 2024
https://github.com/jefferis/nat.as
NAT: Wrapper for informal neuroanatomy AnalysisSuite codebase
Last synced: 11 Oct 2024
https://github.com/jefferis/gscraper
Basic web scraping - designed to generate local cache of remote website
Last synced: 11 Oct 2024
https://github.com/jefferis/dendroextras
Extra functions to cut, label and colour dendrogram clusters
Last synced: 11 Oct 2024
https://github.com/jefferis/p1neurons
Dataset of Drosophila male-specific P1 neurons
Last synced: 11 Oct 2024
https://github.com/jefferis/runu
R wrapper for the unu image processing tool
Last synced: 11 Oct 2024
https://github.com/jefferis/r-opencv
Automatically exported from code.google.com/p/r-opencv
Last synced: 11 Oct 2024
https://github.com/jefferis/emsampling
Experimental functions to analyse EM connectomics data
Last synced: 11 Oct 2024
https://github.com/jefferis/flynblastscores
R package to provide RESTful interface via opencpu to NBLAST scores for fly neurons
Last synced: 11 Oct 2024