Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
Projects in Awesome Lists by robsyme
A curated list of projects in awesome lists by robsyme .
https://github.com/robsyme/nextflow-annotate
Workflows I find helpful for fungal genome annotation
Last synced: 15 Oct 2024
https://github.com/robsyme/nf-repeatmasking
Nextflow workflow for automatic repeat detection, classification and masking
bioinformatics genomics nextflow transposable-elements
Last synced: 15 Oct 2024
https://github.com/robsyme/succinctbitset
Fast rank and select operations on indexed bitsets.
Last synced: 15 Oct 2024
https://github.com/robsyme/bioruby-chado
A library that allows you to pull ruby objects out of a Chado-schema database
Last synced: 15 Oct 2024
https://github.com/robsyme/wavelettree
Rough sketches of wavelet trees for providing fast rank queries on non-binary alphabets.
Last synced: 15 Oct 2024
https://github.com/robsyme/mitehunter
A clone of MITE-Hunter from Yujun Han and Susan Wessler - used for bugfixing
Last synced: 15 Oct 2024
https://github.com/robsyme/polymer-region-selector
A widget that selects max and min bounds on a genomic sequence of a given length.
Last synced: 15 Oct 2024
https://github.com/robsyme/workflows-proteogenomics
Versioned, shareable and replicable workflows for proteogenomics.
Last synced: 15 Oct 2024
https://github.com/robsyme/gortex
Tool to pull out species-specific sequence from coloured graphs generated by Cortex-var
Last synced: 15 Oct 2024
https://github.com/robsyme/comparative-sketch
A very quick and dirty sketch to quickly visualise large-scale genome comparisons in non-model organisms. Also might be handy for creating SVG drafts which can be cleaned up in Inkscape for publication.
Last synced: 15 Oct 2024
https://github.com/robsyme/acnfp-trans-counter
A very quick and dirty project to help out a colleague
Last synced: 15 Oct 2024
https://github.com/robsyme/bioruby-lazyblastxml
A plugin that allows you to parse large blast XML output files lazily, reading only what you need.
Last synced: 15 Oct 2024
https://github.com/robsyme/genemark-extractor
Tools for taking GeneMark output and pulling out the relevant sequences from the original fasta file.
Last synced: 15 Oct 2024
https://github.com/robsyme/parastagonospora_nodorum_sn15
Storage and edit history for ACNFP gene models.
Last synced: 15 Oct 2024
https://github.com/robsyme/fasta_util
An easy way of performing some common operations on fasta files
Last synced: 15 Oct 2024
https://github.com/robsyme/ob-sparql
org-babel functions for SPARQL evaluation
Last synced: 15 Oct 2024
https://github.com/robsyme/show-and-tell
Dummy repository for CIC's show and tell
Last synced: 15 Oct 2024
https://github.com/robsyme/uvarobrowser
Learning to use web components by writing a genome annotation editor. Very, very rough at the moment.
Last synced: 15 Oct 2024
https://github.com/robsyme/parastagonospora_nodorum_sn4
Storage and edit history for ACNFP gene models.
Last synced: 15 Oct 2024
https://github.com/robsyme/ripsaw
Segment the genome according to dinucleotide frequencies
Last synced: 15 Oct 2024
https://github.com/robsyme/temporary-empress
Temporary repository for debugging empress ticket
Last synced: 15 Oct 2024
https://github.com/robsyme/nf-nucmercoverage
A humble nextflow pipeline to compare the coverage of some reference genome(s) by nucmer matches of some other genomes. Produces svg (gg)plots.
bioinformatics genomics nextflow
Last synced: 15 Oct 2024
https://github.com/robsyme/cbw_htseq_module2
Module 2 materials for Informatics on High Throughput Sequencing Data
Last synced: 15 Oct 2024
https://github.com/robsyme/nextflow-intro
My slide deck for introducing new users to nextflow
Last synced: 15 Oct 2024
https://github.com/robsyme/markerdev
A nextflow pipeline for developing markers that differentiate one set of individuals from another.
Last synced: 15 Oct 2024
https://github.com/robsyme/xenome
Dummy repo for stress testing fusion with xenome
Last synced: 15 Oct 2024
https://github.com/robsyme/slas-demo
Demonstration repository for SLAS 2024
Last synced: 15 Oct 2024
https://github.com/robsyme/hello-world-00
Demonstration pipeline for tutorial
Last synced: 15 Oct 2024
https://github.com/robsyme/test-branching
Test repo for debugging Tower behaviour
Last synced: 15 Oct 2024
https://github.com/robsyme/ansible-playbooks
A collection of playbooks used for managing machines
Last synced: 15 Oct 2024
https://github.com/robsyme/testproject
Just a dummy project to test something
Last synced: 15 Oct 2024
https://github.com/robsyme/orgslides
Very basic dart/javascript to turn existing orgmode html output into slides.
Last synced: 15 Oct 2024
https://github.com/robsyme/micm-2020-demo
Demonstration repository for dummy code
Last synced: 15 Oct 2024
https://github.com/robsyme/parastagonospora_nodorum_sn79
Storage and edit history for ACNFP gene models.
Last synced: 15 Oct 2024
https://github.com/robsyme/micm-workshop-demo
A demonstration repository for developing Nextflow pipelines.
Last synced: 15 Oct 2024
https://github.com/robsyme/docker-cortex_var
Docker container for the variant assembler cortex_var
Last synced: 15 Oct 2024
https://github.com/robsyme/nf-test
A repository for various tests and minimal-reproducible-example workflows
Last synced: 15 Oct 2024
https://github.com/robsyme/bioruby-mummer
Help for working with the output of the .delta files produced by nucmer and promer
Last synced: 15 Oct 2024
https://github.com/robsyme/turbo-octo-happiness
Observations about interplenetary adventures
Last synced: 15 Oct 2024
https://github.com/robsyme/schema-demo
Demonstration of Minimal(ish) handling of nextflow schema
Last synced: 15 Oct 2024
https://github.com/robsyme/slide-deck
Polymer elements that act like impress.js presentations.
Last synced: 15 Oct 2024
https://github.com/robsyme/nf-tempdemo
Temporary repository for testing missing main.nf behavior
Last synced: 15 Oct 2024
https://github.com/robsyme/modules
Minimal nf-core style modules repository
Last synced: 15 Oct 2024
https://github.com/robsyme/waitlift
A small application for stress testing the filesystem
Last synced: 15 Oct 2024
https://github.com/robsyme/nextflow-bug-report
Tiny repository to demonstrate a potential bug in nextflow
Last synced: 15 Oct 2024
https://github.com/robsyme/rustalind
Documenting the process of learning rust by implementing exercises from http://rosalind.info
rosalind-bioinformatics-challenge rosalind-exercises rosalind-solutions
Last synced: 15 Oct 2024