Projects in Awesome Lists by royerlab
A curated list of projects in awesome lists by royerlab .
https://github.com/royerlab/napari-chatgpt
A napari plugin to process and analyse images with chatGPT!
Last synced: 07 Feb 2026
https://github.com/royerlab/napari-segment-anything
Segment Anything Model (SAM) native Qt UI
Last synced: 03 Jul 2025
https://github.com/royerlab/aydin
Aydin — User-friendly, Fast, Self-Supervised Image Denoising for All.
deep-learning denoising image image-processing machine-learning neural-network python
Last synced: 03 Jul 2025
https://github.com/royerlab/ultrack
Cell tracking and segmentation software
cell-segmentation cell-tracking cell-tracking-challenge gurobi
Last synced: 03 Jul 2025
https://github.com/royerlab/cytoself
Self-supervised models for encoding protein localization patterns from microscopy images
autoencoder deep-learning fluorescence imaging microscopy opencell protein pytorch self-supervised self-supervised-learning tensorflow
Last synced: 03 Jul 2025
https://github.com/royerlab/intracktive
Interactive visualization and sharing of cell tracking data in the browser
Last synced: 13 Oct 2025
https://github.com/royerlab/napari-segment-anything-2
Native Qt interface for Meta's Segment Anything 2 in Images and Videos
Last synced: 12 Apr 2025
https://github.com/royerlab/ssi-code
Image Deconvolution via Noise-Tolerant Self-Supervised Inversion
deconvolve denoise-images python
Last synced: 03 Jul 2025
https://github.com/royerlab/daxi
High-Resolution, Large Field-of-View, and Multi-ViewSingle Objective Light-Sheet Microscopy
Last synced: 03 Jul 2025
https://github.com/royerlab/litemind
litemind is a Python library designed to empower developers to build sophisticated conversational agents and tools. It provides a flexible and elegant API for interacting with Large Language Models (LLMs) from various providers, along with a powerful agentic AI framework that supports multimodal inputs and outputs.
Last synced: 18 Aug 2025
https://github.com/royerlab/pipython
PIPython is a collection of Python modules to access a PI device and process GCS data.
Last synced: 11 Oct 2025
https://github.com/royerlab/trackedit
Interactive tracks editing tool for Ultrack
Last synced: 03 Jul 2025
https://github.com/royerlab/zebrahub-paper-umap-3d
Generate 3D UMAPs of zebrafish
Last synced: 03 Jul 2025
https://github.com/royerlab/czpeedy
A tool for experimentally determining the best tensorstore spec for a given machine and dataset.
Last synced: 03 Jul 2025
https://github.com/royerlab/ultrack-i2k2024
Ultrack From Images to Knowledge (I2k) 2024 Workshop
cell-tracking cell-tracking-challenge ultrack
Last synced: 02 Feb 2026
https://github.com/royerlab/zaf
ZAF(Zebrafish Automated Feeder): Software needed for automated fish feeding system of our fish facility
Last synced: 03 Jul 2025
https://github.com/royerlab/ultrack-td
Tracksdata compatible ultrack package
Last synced: 04 Mar 2026
https://github.com/royerlab/opensimview
New ClearControl + Dorado +.... combined repo
Last synced: 03 Jul 2025
https://github.com/royerlab/tracksdata
A common data structure and basic tools for multi-object tracking.
cell-tracking cell-tracking-challenge multi-object-tracking tracking
Last synced: 31 Jul 2025
https://github.com/royerlab/zebrahub-napari-animation
Zebrahub's napari-animation demo
Last synced: 03 Jul 2025
https://github.com/royerlab/dmp40j
Wrapper around Thorlabs DMP40 deformable mirror API
Last synced: 03 Jul 2025
https://github.com/royerlab/ultrack-i2k2023
Ultrack https://github.com/royerlab/ultrack from Images to Knowledge - 2023 workshop
Last synced: 03 Jul 2025
https://github.com/royerlab/zebrahub-paper-hcr-analysis
Scripts for analyzing HCR data for zebrafish tail.
Last synced: 03 Jul 2025
https://github.com/royerlab/preprints
All Royer lab preprints can be found here
Last synced: 02 Feb 2026
https://github.com/royerlab/napari-3d-rotation
Generate rotating 3D UMAP in napari
Last synced: 03 Jul 2025
https://github.com/royerlab/ludl-filterwheel
Arduino code to drive LUDL filterwheels
Last synced: 28 Oct 2025
https://github.com/royerlab/sample-project
Sample microscope project for ClearControl environment
Last synced: 24 Aug 2025
https://github.com/royerlab/softcopy
Copies zarr archives from an acquisition frontend to a different disk, using filesystem watching and lockfiles to allow copying during acquisition
Last synced: 10 Apr 2026
https://github.com/royerlab/ultrack_td
Tracksdata compatible ultrack package
Last synced: 24 Jul 2025
https://github.com/royerlab/ultrack-atini-2025
Ultrack's hands-on exercise for Advanced Techniques in NeuroImaging (ATiNI) 2025
cell-segmentation cell-tracking cell-tracking-challenge
Last synced: 03 Feb 2026
https://github.com/royerlab/aptj
APTJ - Java bindings for Thorlabs' APT library
Last synced: 03 Jul 2025