Common Workflow Language

CWL documents describe workflows made of command line data analysis tools in a portable, reproducible, and reusable fashion.

• GitHub: https://github.com/topics/cwl
• Wikipedia: https://en.wikipedia.org/wiki/Common_Workflow_Language
• Repo: https://github.com/common-workflow-language
• Created by: Peter Amstutz, John Chilton, Michael R. Crusoe, Nebojša Tijanić, and the CWL Community
• Released: January 2015
• Aliases: common-workflow-language, commonwl,
• Last updated: 2024-07-29 13:36:21 UTC
• JSON Representation

https://github.com/common-workflow-language/common-workflow-language

Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊

common-workflow-language commonwl containers cwl science sciworkflows workflow workflows

Last synced: 02 Aug 2024

https://github.com/DataBiosphere/toil

A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.

aws common-workflow-language cwl gridengine kubernetes mesos pipeline python slurm wdl workflow workflow-description-language

Last synced: 01 Aug 2024

https://github.com/arvados/arvados

An open source platform for managing and analyzing biomedical big data

arvados aws azure bigdata bioinformatics cloud cluster cwl docker gcp genomics go python ruby workflow workflow-engine

Last synced: 01 Aug 2024

https://github.com/Barski-lab/cwl-airflow

Python package to extend Airflow functionality with CWL1.1 support

common-workflow-language commonwl containers cwl cwl-airflow cwl-descriptor dag workflow

Last synced: 06 Aug 2024

https://github.com/CBICA/CaPTk

Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk

analytics cancer cancer-imaging-research cbica cpp cpp11 cwl cwltool image-analysis itcr machine-learning medical-image-computing medical-image-processing medical-imaging nci nci-itcr nih radiomics radiomics-features u24

Last synced: 03 Aug 2024

https://github.com/EBI-Metagenomics/emg-viral-pipeline

VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies

cwl nextflow pipeline viruses workflow

Last synced: 03 Aug 2024

https://github.com/4dn-dcic/tibanna

Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.

aws aws-lambda aws-step-function bioinformatics conda cwl cwl-workflow docker pipelines snakemake snakemake-workflow wdl wdl-workflow

Last synced: 01 Aug 2024

https://github.com/antonjan/Raspberry_Telemetry

This project will have the files for a Cube Sat Telemetry system Using Raspberry Pi Transmitter Board

afsk aprs ax25 balloon command cwl direwolf satellite sdr telemetry transponder

Last synced: 01 Aug 2024

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