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Medical imaging

Medical imaging is the technique and process of creating visual representations of the interior of a body for clinical analysis, and medical intervention.

https://github.com/magnusja/relaynet

Measuring uncertainty in Deep Learning for Medical Imaging using Monte Carlo Dropout

cnn fcn medical-imaging neural-network pytorch relaynet uncertainty-estimation

Last synced: 14 Oct 2024

https://github.com/asvcode/fmi

Additional functionality for use with fastai’s medical imaging module

dicom medical-imaging

Last synced: 31 Oct 2024

https://github.com/QSolutionsLLC/cornerstone-tool-image-statistics

⚕️📊 A simple overlay tool that adds debugging information over the canvas #CornerstoneJS

cornerstone cornerstonejs cornerstonejs-market medical-imaging plugin tool

Last synced: 09 Nov 2024

https://github.com/aehrc/cxrmate

CXRMate: Longitudinal Data and a Semantic Similarity Reward for Chest X-Ray Report Generation

chest-x-ray-report-generation chest-xray-images image-captioning medical-imaging multimodal-learning radiology-reports

Last synced: 25 Nov 2024

https://github.com/sayakpaul/malaria-detection-with-deep-learning

Deep learning based solution to automatically analyze medical images for malaria testing

computer-vision deep-learning fastai medical-imaging resnet-34

Last synced: 13 Jan 2025

https://github.com/jonclayden/divest

Get images out of DICOM format quickly

conversion dicom medical-imaging r

Last synced: 08 Nov 2024

https://github.com/masadcv/econet-monailabel

Official Implementation of ECONet: Efficient Convolutional Online Likelihood Network for Interactive Segmentation

deep-learning medical-imaging segmentation

Last synced: 14 Nov 2024

https://github.com/juliahealth/medeye3d.jl

Julia library for visualization and annotation medical images, specialized particularly for rapid development segmentation of 3 dimensional images like CT or PET/CT scans. Has full support of nuclear medicine Data.

julia-language medical-imaging nuclear-medicine open-source opengl segmentation

Last synced: 01 Nov 2024

https://github.com/zhaotianff/imageviewer

Dicom Image Viewer.A simple imgview control that can be used as a tool when exporting Dicom images,full Implemented by C#.

csharp dicom dicom-image-viewer dicom-viewer medical-imaging raw-image wpf

Last synced: 15 Nov 2024

https://github.com/nv-tlabs/fed-sim

Federated Simulation for Medical Imaging (MICCAI2020)

generative-model medical-imaging miccai-2020 simulation

Last synced: 30 Dec 2024

https://github.com/wenyalintw/level-set-visualizer

Visualize image segmentation based on level set method.

dicom image-processing image-segmentation itk level-set levelset medical-imaging vtk

Last synced: 11 Nov 2024

https://github.com/tomaszrewak/cnn-chest-x-ray-abnormalities-localization

Using CNN, transfer learingn and attribution methods to localize abnormalities on x-ray chest images.

attribution chest-xray-images convolutional-neural-networks deep-learning medical-imaging tensorflow transfer-learning vgg16

Last synced: 09 Nov 2024

https://github.com/ivmartel/dwv-simplistic

Medical image viewer based on DWV (DICOM Web Viewer) and simple HTML.

dicom-web-viewer dwv medical-imaging

Last synced: 14 Oct 2024

https://github.com/kitwaremedical/slicernnunet

3D Slicer nnUNet integration to streamline usage for nnUNet based AI extensions.

3d-slicer-extension machine-learning medical-imaging nnunet

Last synced: 14 Nov 2024

https://github.com/googlecloudplatform/medical-imaging

Accelerate ingestion/transformation of pathology images into DICOMWeb

dicom healthcare medical-imaging pathology

Last synced: 07 Oct 2024

https://github.com/amypad/spm12

Python wrapper around MATLAB and SPM12

image-registration matlab medical-imaging python

Last synced: 12 Nov 2024

https://github.com/jinglescode/meditorch

A PyTorch package for biomedical datasets processing, development and testing.

computer-vision deep-learning image-processing medical-imaging pytorch

Last synced: 16 Oct 2024

https://github.com/masadcv/monet-monailabel

Official PyTorch implementation for "Adaptive Multi-scale Online Likelihood Network for AI-assisted Interactive Segmentation" (MONet)

deep-learning medical-imaging segmentation

Last synced: 14 Nov 2024

https://github.com/microsoft/innereye-dicom-rt

DICOM-RT to mask python package used by https://github.com/microsoft/InnerEye-deeplearning

ai medical-imaging

Last synced: 17 Jan 2025

https://github.com/hasibzunair/tuberculosis-severity

10th place solution to the ImageCLEF Tuberculosis 2019 - Severity Scoring.

3d-convolutional-network classification deep-learning medical-imaging tuberculosis volumetric-data

Last synced: 10 Nov 2024

https://github.com/cran-task-views/medicalimaging

CRAN Task View: Medical Image Analysis

cran medical-imaging r rstats task-views

Last synced: 27 Nov 2024

https://github.com/vsoch/som

Stanford open modules for python

api dicom medical-imaging nifti standards

Last synced: 13 Jan 2025

https://github.com/cgalaz01/aladdin_cmr_la

Source code for Aladdin, a complete workflow for 3D MRI left atrium motion analysis

cardiac image-registration image-segmentation left-atrium medical-imaging mri tensorflow

Last synced: 22 Nov 2024

https://github.com/gabrielfduarte/dicom-explorer

Web system for identification and analysis of header tags from DICOM files and comparison of tags between files of the type.

cornerstone dicom html javascript medical-imaging

Last synced: 16 Nov 2024

https://github.com/kjaisingh/pneumonia-diagnosis

A Convolutional Neural Network that is able to detect whether a patient has pneumonia, both bacterial and viral, based on an X-ray image of their chest.

artificial-intelligence convolutional-neural-networks machine-learning medical medical-imaging transfer-learning vgg19

Last synced: 07 Jan 2025

https://github.com/fperdigon/LVNet

Left ventricle segmentation tool using deep learning

caffe cnn convolutional-neural-networks deep-learning medical-imaging segmentation

Last synced: 26 Oct 2024

https://github.com/imagingdatacommons/nnu-net-bpr-annotations

Code accompanying this dataset: Krishnaswamy, D., Bontempi, D., Clunie, D., Aerts, H. & Fedorov, A. AI-derived annotations for the NLST and NSCLC-Radiomics computed tomography imaging collections. (2022). doi:10.5281/zenodo.7473970

colaboratory deep-learning dicom medical-image-processing medical-imaging reproducible-research

Last synced: 18 Nov 2024

https://github.com/thelabbingproject/django_dicom

A reusable django app to manage DICOM files.

dicom django-app medical-imaging research-data-management

Last synced: 28 Nov 2024

https://github.com/aim-harvard/cxr-lung-risk

Deep learning to estimate lung-related mortality from chest radiographs.

chest-xray-images chest-xrays deep-learning image-analysis medical-imaging risk-prediction

Last synced: 20 Nov 2024

https://github.com/casperdcl/brain_phantom

3D continuous brain phantom

brain medical-imaging phantom vtk

Last synced: 24 Oct 2024

https://github.com/kaczmarj/ants-builds

Dockerfile to build ANTs from source

ants docker medical-imaging neuroimaging registration

Last synced: 27 Oct 2024

https://github.com/arindas/papaya-react

React wrapper around Papaya medical image viewer.

dicom medical-imaging nifti reactjs

Last synced: 23 Nov 2024

https://github.com/Brikwerk/ctqa

An application for automated CT quality assurance

ct-quality-assurance drift-detection homogeneity medical-imaging python quality-assurance

Last synced: 10 Nov 2024

https://github.com/sovit-123/pneumonia-detection-using-deep-learning

Detecting pneumonia from chest radiographs using deep learning with the PyTorch framework. Faster RCNN ResNet50 backbone.

chest-xray-images deep-learning faster-rcnn lung-pneumonia-detection medical-imaging neural-network pytorch

Last synced: 08 Dec 2024

https://github.com/avishreekh/chest-x-ray-abnormality-classification

This projects aims to detect abnormalities in chest X-rays using methods in Deep Learning.

deep-learning keras medical-imaging

Last synced: 02 Dec 2024

https://github.com/ysh329/kaggle-cervical-cancer-screening-classification

Solution and summary for Intel & MobileODT Cervical Cancer Screening (3-class classification)

classification deep-learning image-processing kaggle kaggle-competition medical-imaging

Last synced: 29 Oct 2024

https://github.com/wmkouw/mrai-net

MR acquisition-invariant neural network

machine-learning medical-imaging mri neural-networks

Last synced: 30 Oct 2024

https://github.com/kisonho/magnet

Modality-Agnostic Learning for Medical Image Segmentation Using Multi-modality Self-distillation

computer-vision machine-learning medical-imaging segmentation self-distillation

Last synced: 05 Dec 2024

https://github.com/princeegy/medical-image-analysis

A tool for analyzing different medical images based on Deep learning model

computer-vision deep-learning image-classification machine-learning medical-imaging python streamlit

Last synced: 30 Dec 2024

https://github.com/shuyib/cell-explorer-tool

An image explorer tool that uses ipywidgets and image manipulation in Pillow to look for and refine features in a image. This is mostly pitched on cell biology, cytopathology and histopathology.

cell-biology cytopathology histopathology image-processing interactive ipynb ipywidgets medical-imaging mybinder pathology

Last synced: 28 Nov 2024

https://github.com/hahnec/gulm

Geometric Ultrasound Localization Microscopy (MICCAI 23): Ellipse Intersections from Time-Difference-of-Arrival signals

ceus contrast-enhancement ellipse geometric imaging intersection localization medical medical-imaging microbubble microscopy time-of-arrival time-of-flight ulm ultrasound vascular vascular-flow

Last synced: 15 Nov 2024

https://github.com/fifaak/strokeseg-ai

AI-Powered Brain Stroke Segmentation using U-Net with ResNet Encoder | SMTE 2024 Project

3d-reconstruction architecture artificial-intelligence ctscan deep-learning medical-imaging resnet stroke-segmentation unet unet-resnet

Last synced: 17 Dec 2024

https://github.com/openlifescience-ai/Awesome-AI-LLMs-in-Radiology

A curated list of awesome resources, papers, datasets, and tools related to AI in radiology. This repository aims to provide a comprehensive collection of materials to facilitate research, learning, and development in the field of AI-powered radiology.

llm llms medical medical-imaging medical-llm radiologist radiology radiology-imaging radiology-report-generation radiology-reports

Last synced: 06 Jan 2025

https://github.com/danifranco/timise

Toolbox for Identifying Mitochondria Instance Segmentation Errors

computer-vision deep-learning instance-segmentation machine-learning medical-imaging mitochondria statistics

Last synced: 11 Oct 2024

https://github.com/cyrilzakka/phantom

Effective DICOM anonymization in Python

anonymization dicom medical-image-processing medical-imaging pydicom

Last synced: 21 Jan 2025

https://github.com/clementapa/prostate-cancer-image-classification

Deep Learning for medical imaging kaggle challenge for the MVA master 2021-2022. Classification of ISUP grades from Whole Slide Images.

cancer-detection classification deep-learning image-classification kaggle-competition medical-imaging whole-slide-imaging

Last synced: 23 Oct 2024

https://github.com/fepegar/jvol

JPEG compression for 3D medical images.

jpeg medical-imaging

Last synced: 15 Oct 2024

https://github.com/bring-shrubbery/st-andrews-dissertation

Code for my MSc Artificial Intelligence dissertation at the University of St Andrews

cnn-keras computed-tomography deep-learning medical-image-analysis medical-imaging

Last synced: 18 Dec 2024

https://github.com/seanvelasco/ecg.js

ECG viewer for medical device data using D3.js and vanilla TypeScript

d3 dicom ecg ekg healthcare image-processing lttb lzw medical-imaging

Last synced: 24 Nov 2024

https://github.com/sarthakpati/pytorchmodelimporttemplate

An example shoowing how to import a PyTorch model and use it using C++

cmake cpp cpp11 medical-imaging pytorch pytorch-tutorial torch tutorial

Last synced: 18 Dec 2024

https://github.com/the-swarm-corporation/medguard

MedGuard is a robust, production-grade Python library that ensures HIPAA compliance for large language model (LLM) agents. Designed for enterprise applications in healthcare, MedGuard provides comprehensive security, privacy, and compliance frameworks that integrate seamlessly into your AI-driven workflows.

agents ai health medical-agent medical-imaging ml swarms transformers

Last synced: 02 Dec 2024

https://github.com/niklr/animated-medical-imaging

Streamlines the process of generating an optimal subset representing a multi-dimensional medical image and combining the subset to an animated sequence.

csharp dicom docker dotnet itk medical-imaging microservice simpleitk

Last synced: 16 Nov 2024

https://github.com/aman-095/single-image-super-resolution-using-esrgan

Using an already existing ESRGAN model, degrading our HR images to generate training data for finetuning and further checking the MSE and PSNR for the generated and the original HR images. Link to the original link of Real ESRGAN Repo - https://github.com/xinntao/Real-ESRGAN

averaging-filter esrgan gaussian-blur image-degradation medical-imaging super-resolution

Last synced: 12 Oct 2024

https://github.com/viacheslavdanilov/oct_segmentation

This repository is dedicated to the segmentation of optical coherence tomography (OCT) images and the analysis of the plaques that appear on them

deep-learning image-processing machine-learning medical-imaging segmentation

Last synced: 07 Jan 2025

https://github.com/seanvelasco/python-dimse

Sample DIMSE commands for DICOM SCUs and SCPs in Python

dicom dimse medical-imaging pacs

Last synced: 24 Jan 2025

https://github.com/neuro-ml/low-resolution

Code release for the paper B. Shirokikh, A. Shevtsov et al. "Accelerating 3D Medical Image Segmentation by Adaptive Small-Scale Target Localization"

deep-learning lung-cancer-detection medical-image-analysis medical-image-segmentation medical-imaging metastases

Last synced: 07 Jan 2025

https://github.com/google-developers-sohag/therac-25-anti-patterns

Analysis of the most famous historical catastrophic medical radiotherapy device including it's catastrophic software anti-patterns.

antipatterns error-analysis error-handling malfunction medical-imaging medicine pdp-11 radiotherapy software-engineering software-failure therac-25

Last synced: 08 Jan 2025

https://github.com/lrq3000/csg_dicoms_anonymizer

Robust and easy to use generic dicoms anonymizer with demographics csv spreadsheet anonymization by hashed ids

anonymization anonymizer dicom dicom-files dicom-images medical medical-imaging medical-informatics

Last synced: 05 Jan 2025

https://github.com/we-gold/crop-locator-tool

Locates crops taken from micro-CT scans using JavaScript and GPU acceleration (CURRENTLY ONLY SUPPORTS SPECIFIC LAB FORMATS).

image image-processing javascript js medical-imaging template-matching tiff

Last synced: 07 Jan 2025

https://github.com/iiseymour/fundus-image-diagnosis

Automated diagnosis of ophthalmic conditions based on retinal image processing and machine learning techniques

artificial-intelligence machine-learning medical-imaging

Last synced: 06 Jan 2025

https://github.com/stanfordmlgroup/Auto-Generate-WLs

Code repository supporting the paper "Auto-Generating Weak Labels for Real & Synthetic Data to Improve Label-Scarce Medical Image Segmentation" - MIDL 2024

medical-imaging segment-anything

Last synced: 30 Nov 2024

https://github.com/ch00k/orthanc-rs

REST API client for Orthanc, an open-source, lightweight DICOM server

api cli client command-line dicom medical medical-imaging orthanc rest rust

Last synced: 23 Jan 2025

https://github.com/aehrc/imageclefmedical_caption_23

MedICap: Code for the participation of team CSIRO at the ImageCLEFmedical Caption task of 2023.

image-captioning medical-image-captioning medical-imaging multimodal multimodal-learning report-generation

Last synced: 25 Nov 2024

https://github.com/kevinkit/correctsitting

This is a project that will make you sit correctly. It will take advante of machine learning algorithms.

keras machine-learning medical-imaging opencv tensorflow

Last synced: 23 Jan 2025

https://github.com/sajith-dilshan/brain-tumor-detection-system

brain tumor detection system using VGG16 architecture

cnn deep-learning medical-imaging vgg-16

Last synced: 31 Jan 2025

https://github.com/insigneo/ma-socratis

Multi-Atlas - Segmentation Of Cardiac Regions And Total Ifarct Scar (MA-SOCRATIS) is an unsupervised automatic pipeline that is capable of segmenting ventricular myocardium and scar from late gadolinium enhanced MR images (LGE-MRI) of left ventricle

artificial-intelligence atlas cardiac-segmentation deep-learning machine-learning medical-imaging scar-segmentation segmentation

Last synced: 15 Jan 2025

https://github.com/justusschock/medical-data

Helpful utilities for deep learning in medical image analysis/medical image computing

deep-learning medical-imaging pytorch pytorch-lightning

Last synced: 28 Oct 2024

https://github.com/felipealfonsog/vesicleinsight

VesicleInsight is -will be- an advanced Python-based software utilizing machine learning to analyze medical imaging data, specifically focusing on vesicle anomalies. Our mission is to deliver a powerful tool for healthcare professionals, enhancing the precision and efficiency of early detection and diagnosis in medical imaging.

diagnosis-tool machine-learning-algorithms medical-imaging medical-informatics

Last synced: 12 Dec 2024

https://github.com/pulkit-khandelwal/purple-mri

Penn Utilities for Registration and ParcelLation of Ex vivo MRI

alzheimer-disease deep-learning medical-imaging neuroimaging

Last synced: 03 Jan 2025

https://github.com/ammarlodhi255/fine-grained-approach-to-wrist-pathology-recognition

This repository contains the official code for the paper "Learning from the Few: Fine-grained Approach to Wrist Pathology Recognition on a Limited Dataset".

explainable-ai fine-grained-classification fracture-detection fracture-recognition gradcam grazpedwri-dx medical-imaging wrist-abnormalities wrist-pathologies wrist-xrays

Last synced: 18 Jan 2025

https://github.com/basedrhys/non-roi-masking

Evaluation of non-ROI masking to improve OOD generalization in chest x-ray disease classification

chest-xrays classification medical-data medical-imaging ood-generalization

Last synced: 24 Dec 2024

https://github.com/cable8mm/annotation-objc

Medical annotation client for iPad

annotation-tool ipad medical-imaging objective-c

Last synced: 15 Jan 2025

https://github.com/vincenzocivale/unityigtconnector

UnityIGTConnector is a Unity integration of the OpenIGTLink protocol, allowing for real-time communication and advanced visualization of medical data in mixed reality applications. Perfect for enhancing surgical support with HoloLens 2

3d-slicer-extension hololens2 medical-imaging mixed-reality openigtlink surgical-tools unity3d-plugin

Last synced: 18 Jan 2025