Projects in Awesome Lists by KitwareMedical

This repository contains python implementations on Low-rank-plus-sparse, Atlas-to-image Registration (pyLAR) framework and its applications in medical image analysis and computer vision.

Last synced: 10 Apr 2025

https://github.com/kitwaremedical/cardiacultrasoundphaseestimation

This repository contains an image-based instantaneous phase estimation method for gating and temporal super-resolution of cardiac ultrasound

Last synced: 27 Jun 2025

https://github.com/kitwaremedical/slicercbcttoothsegmentation

Slicer extension for automated segmentation of individual teeth in cone-beam CT dental scans using a deep-learning based approach.

3d-slicer-extension cbct-images dental segmentation

Last synced: 17 Aug 2025

https://github.com/kitwaremedical/courseinbiomedicalimageanalysisandvisualization

Kitware Course in Biomedical Image Analysis and Visualization: ITK

Last synced: 10 Apr 2025

https://github.com/kitwaremedical/kitwarefileviewers

Browser extension to open URL in Kitware online viewers

Last synced: 10 Apr 2025

https://github.com/kitwaremedical/dicom-exporter

DICOM file converter in Python

dicom itk python vtk-js

Last synced: 10 Apr 2025

https://github.com/kitwaremedical/vtk-js-cinematic-rendering-internship-2022-experiments

Collection of vtk.js based cinematic rendering experiments.

Last synced: 11 Oct 2025

https://github.com/kitwaremedical/itkioscanco

ITK Image IO for Scanco MicroCT .ISQ files

imaging itk-module micro-ct scanco

Last synced: 07 May 2025

https://github.com/kitwaremedical/slicercat

Example Application for Slicer Customization - Generated from KitwareMedical/SlicerCustomAppTemplate

3d-slicer-custom-application cmake kitware

Last synced: 10 Apr 2025

https://github.com/kitwaremedical/tubetk-pypbm

Pattern-based morphometry for vascular analysis.

Last synced: 09 Jul 2025

https://github.com/kitwaremedical/ultrasoundintersonapps

Interactive ultrasound applications using streamed images from an Interson linear array probe.

computer-assisted-diagnosis medical optic-nerve trauma ultrasound

Last synced: 26 Jun 2025

https://github.com/kitwaremedical/osteotomyplanner

3D Slicer extension to visualize and plan an osteotomy surgery.

3d-slicer-extension

Last synced: 20 Aug 2025

https://github.com/kitwaremedical/itkstrain

ITK filters to estimate a strain tensor field from a displacement field or a spatial transformation.

itk itk-module strain-imaging strain-tensor

Last synced: 22 Aug 2025

https://github.com/kitwaremedical/intersonarraysdkcxx

C++ Wrapper for the C# SDK for Interson's Linear Array Probe

Last synced: 08 Aug 2025

https://github.com/kitwaremedical/histologycancerdiagnosisdeeppersistencehomology

Cancer Diagnosis in Histology Images using Deep Learning and Persistence Homology

Last synced: 10 Apr 2025

https://github.com/kitwaremedical/pydstk

Python Dynamical Systems Toolkit.

Last synced: 10 Mar 2026

https://github.com/kitwaremedical/slicerimstk

Extension for 3D slicer that enables user to prototype real-time multi-modal surgical simulation scenarios by leveraging iMSTK

3d-slicer-extension

Last synced: 07 Mar 2026

https://github.com/kitwaremedical/hasi

High-throughput Applications for Skeletal Imaging

Last synced: 01 Apr 2026

https://github.com/kitwaremedical/lungair-desktop-application

Desktop application for AI-based BPD risk analysis

3d-slicer-custom-application kitware lungair

Last synced: 18 Jun 2025

https://github.com/kitwaremedical/paraview-glance-py

An extended version of ParaView Glance that supports an integrated python server, e.g., for running ITK algorithms...

Last synced: 12 Mar 2026

https://github.com/kitwaremedical/2019-imagexd-registration-tutorial

Last synced: 07 Oct 2025

https://github.com/kitwaremedical/slicerpipelines

Pipelines are an extension for 3DSlicer that will offer the ability to create simple modules (aka pipelines) via a GUI interface with no coding knowledge needed.

3d-slicer-extension

Last synced: 10 Apr 2025

https://github.com/kitwaremedical/trame-slicer

Bring the capabilities of 3D Slicer to the web with modern UI using the trame framework!

3d-slicer medical-imaging trame vue

Last synced: 25 Oct 2025

https://github.com/kitwaremedical/vtkexternalmodule

CMake buildsystem for externally building any built-in or remote VTK module outside of the VTK source tree.

cmake vtk

Last synced: 06 Mar 2026

https://github.com/kitwaremedical/itkdicom

Better support for DICOM in ITK.

dcmtk dicom itk itk-module

Last synced: 25 Oct 2025

https://github.com/kitwaremedical/slicermixedreality

A Slicer extension that enables user to interact with a Slicer scene using mixed reality headset.

3d-slicer 3d-slicer-extension cmake kitware mixed-reality openxr vtk

Last synced: 22 Sep 2025

https://github.com/kitwaremedical/slicer-camerapath

Slicer module for Intelligent Virtual Surgical Planning

3d-slicer-custom-application 3d-slicer-extension

Last synced: 10 Apr 2025

https://github.com/kitwaremedical/ultrasoundscoliosis

A C++ Program for inferring the Cobb Angle of a Spinal Ultrasound in real time.

Last synced: 10 Apr 2025

https://github.com/kitwaremedical/slicerskeletalrepresentation

Collection of Skeletal Model Extensions for 3D Slicer/SlicerSALT

3d-slicer-extension

Last synced: 10 Apr 2025

https://github.com/kitwaremedical/ultrasoundintersonapps-uspectscripts

Focused Assessment with Sonography for Trauma

Last synced: 10 Apr 2025

https://github.com/kitwaremedical/anatomicaugmentedrealityprojector

Last synced: 29 Oct 2025

https://github.com/kitwaremedical/shaperegressionextension

Computation and visualization of time-regressed shapes in a collection of 3D shape inputs associated to a linear variable

3d-slicer-extension kitware

Last synced: 27 Jul 2025

https://github.com/kitwaremedical/itkrleimage

Run-length encoded memory compression scheme for an itk::Image

imaging itk itk-module run-length-encoding

Last synced: 10 Apr 2025

https://github.com/kitwaremedical/sliceritkpython

A Slicer extension for ITK's Python wrapping.

3d-slicer 3d-slicer-extension image-processing itk kitware python registration segmentation

Last synced: 11 Jan 2026

https://github.com/kitwaremedical/vtkcolorcodeddepthvolume

Animate a sequence of NRRD volumes in VTK

Last synced: 03 Mar 2025

https://github.com/kitwaremedical/slicerlookingglass

Extension for 3D slicer that enables user to visualize the 3D scene using the Looking Glass hardware display.

3d-slicer-extension

Last synced: 19 Sep 2025

https://github.com/kitwaremedical/lungair-web-application

Web application based on VolView for AI-based BPD risk analysis

kitware lungair volview-custom-application

Last synced: 06 Oct 2025

https://github.com/kitwaremedical/slicer-macos-codesign-scripts

macOS shell script to extract, codesign, and re-packsign a dmg package. Also create a pkg installer.

Last synced: 10 Apr 2025

https://github.com/kitwaremedical/vpaw

A surgical planning software system targeted to pediatric patients with airway obstruction.

3d-slicer-custom-application

Last synced: 24 Jul 2025

https://github.com/kitwaremedical/habet

HArmonization BEnchmarking Tool

Last synced: 21 Sep 2025

https://github.com/kitwaremedical/volviewcustomapptemplate

VolView custom app template using file overrides to customize a webapp built using Vite

volview-custom-application

Last synced: 14 Apr 2025

https://github.com/kitwaremedical/intersonsdkcxx

C++ Wrapper for the Interson C# SDK

Last synced: 31 May 2026

https://github.com/kitwaremedical/itkhalidefilters

Accelerating ITK Filters with Halide

Last synced: 14 Mar 2026

https://github.com/kitwaremedical/monai-gettingstarted

Last synced: 22 Jun 2025

https://github.com/kitwaremedical/slicerpythontestrunner

Python test runner extension for 3D Slicer based on PyTest and PyTest JSON Report

3d-slicer-extension

Last synced: 10 Apr 2025

https://github.com/kitwaremedical/bender

End-user application to manipulate voxelized anatomical models using an underlying armature

bender

Last synced: 21 Apr 2026

https://github.com/kitwaremedical/mtec-clarius-openigtlink

Last synced: 29 Jul 2025

https://github.com/kitwaremedical/slicerqreads

Slicer-based implementation of QREADS medical image viewer used at Mayo Clinic

3d-slicer-custom-application

Last synced: 10 Sep 2025

https://github.com/kitwaremedical/deprecated-soviewer

Archive of an old library for viewing ITK Spatial Objects, Scenes, and such

Last synced: 08 Jun 2026

https://github.com/kitwaremedical/atlasbuilder

Utilities for creating functional boxplots of 1D data

Last synced: 17 Apr 2026

https://github.com/kitwaremedical/intersonmanager

Last synced: 10 Apr 2025

https://github.com/kitwaremedical/sofa

bender

Last synced: 26 Oct 2025

https://github.com/kitwaremedical/vtk-vue-starter

Starter repo for vtk.js and vue.js

Last synced: 03 Jul 2025

https://github.com/kitwaremedical/slicer-extensions-webapp

Source code of the site allowing to browse and download Slicer extensions. This site is published at extensions.slicer.org and maintained by @Kitware on behalf of the 3D Slicer community.

3d-slicer

Last synced: 29 Nov 2025

https://github.com/kitwaremedical/slicermarkupconstraints

Slicer module to enable Slicer extension developers to constrain and synchronize markups and control points of different nodes.

3d-slicer-extension

Last synced: 16 Oct 2025

https://github.com/kitwaremedical/itkhigherorderaccurategradient

http://www.insight-journal.org/browse/publication/775

image-gradient image-processing imaging itk-module

Last synced: 10 Apr 2025

https://github.com/kitwaremedical/hierarchicalgeodesicmodeling

Last synced: 23 May 2026

https://github.com/kitwaremedical/cleaver

bender

Last synced: 23 Aug 2025

https://github.com/kitwaremedical/slicerehrsandbox

Slicer extension for reading EHR data from a FHIR server and a DICOMweb server.

3d-slicer-extension kitware lungair

Last synced: 03 Mar 2025

https://github.com/kitwaremedical/utm

Optimal transport based population analysis

Last synced: 11 May 2026

https://github.com/kitwaremedical/ultrasoundmeasurementexplorer

A C++ program for exploring properties of RF Ultrasound images in real time

Last synced: 12 Oct 2025

https://github.com/kitwaremedical/itkmultipleimageiterator

ITK remote module from an IJ article at http://www.insight-journal.org/browse/publication/915

itk-module

Last synced: 10 Apr 2025

https://github.com/kitwaremedical/slicersrep2

Slicer extension defining MRML nodes and operations for Skeletal Representations (SReps)

3d-slicer-extension

Last synced: 04 Jun 2026

https://github.com/kitwaremedical/steady

A Python-based workflow system with caching

Last synced: 10 Oct 2025

https://github.com/kitwaremedical/deprecated-itktubetk-dashboardscripts

Archive of scripts used to test ITKTubeTK. Now ITKTubeTK exists as an ITK module, which provides its own testing infrastructure

Last synced: 14 Feb 2026

https://github.com/kitwaremedical/ultrasoundopticnerveestimation

Last synced: 15 Jun 2026

https://github.com/kitwaremedical/slicerparalleltest

Testing code for running two Slicer CLIs in parallel and illustrates issue described here: https://discourse.slicer.org/t/running-a-module-in-parallel/12641/11

Last synced: 28 Oct 2025

https://github.com/kitwaremedical/fhir-sandbox

Tools for building a prepopulated fhir server

kitware lungair

Last synced: 03 Mar 2025

https://github.com/kitwaremedical/ctpmax

Repository for composite making of registered CTA and CTP .nrrd files.

Last synced: 03 Mar 2025

https://github.com/kitwaremedical/slicercustomapputilities

Specialized Slicer modules and scripts to support development of custom 3D Slicer application

Last synced: 07 Jun 2026

https://github.com/kitwaremedical/itkargus

Anatomic Reconstruction for Generalizable UltraSound (ARGUS) AI: A library for point-of-care ultrasound AI using MONAI and ITK

Last synced: 07 May 2025

https://github.com/kitwaremedical/alleninstitutemocklims

Allen Institute Mock LIMS implementation

Last synced: 19 Jun 2025

https://github.com/kitwaremedical/sliceritkultrasounddoc

Documentation for SlicerITKUltrasound

Last synced: 07 Mar 2026

https://github.com/kitwaremedical/pylar-slicerextension

SlicerExtension of the pyLAR library

Last synced: 28 Jul 2025

https://github.com/kitwaremedical/ultrasoundmotioncorrection

ITK C++ code for correction of respiratory motion in ultrasound bubble images

Last synced: 23 May 2026

https://github.com/kitwaremedical/slicer-extensions-legacy-webapp

Source code of the legacy site allowing to browse and download Slicer extensions. This site is maintained by @Kitware on behalf of the 3D Slicer community.

3d-slicer

Last synced: 21 Aug 2025

https://github.com/kitwaremedical/rfviewer

Last synced: 30 Oct 2025

https://github.com/kitwaremedical/vtkpythonbuilds

Binary builds of VTK from Python package generation. For building VTK external module Python packages.

cmake cross-platform python python-wrappings reproducible-research scikit-build visualization vtk

Last synced: 02 Sep 2025

https://github.com/kitwaremedical/slicervirtualmousecursor

A Slicer extension that replaces the usual 2D mouse pointer with a 3D virtual cursor rendered in the scene.

3d-slicer-extension

Last synced: 15 Jun 2026

Last synced: 14 Feb 2026