Projects in Awesome Lists tagged with core-package
A curated list of projects in awesome lists tagged with core-package .
https://github.com/bioconductor/biocparallel
Bioconductor facilities for parallel evaluation
bioconductor-package core-package u24ca289073
Last synced: 08 Apr 2025
https://github.com/bioconductor/biostrings
Efficient manipulation of biological strings
bioconductor-package core-package
Last synced: 09 Oct 2025
https://github.com/bioconductor/genomicranges
Representation and manipulation of genomic intervals
bioconductor-package core-package
Last synced: 09 Apr 2025
https://github.com/bioconductor/googlegenomics
An R package for Google Genomics API queries.
bioconductor-packages core-package retired-package
Last synced: 26 Aug 2025
https://github.com/bioconductor/genomeinfodb
Utilities for manipulating chromosome names, including modifying them to follow a particular naming style
bioconductor-package core-package
Last synced: 28 Apr 2025
https://github.com/bioconductor/summarizedexperiment
A container (S4 class) for matrix-like assays
bioconductor-package core-package
Last synced: 28 Apr 2025
https://github.com/bioconductor/delayedarray
A unified framework for working transparently with on-disk and in-memory array-like datasets
bioconductor-package core-package u24ca289073
Last synced: 03 Aug 2025
https://github.com/bioconductor/rsamtools
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
bioconductor-package core-package
Last synced: 09 Mar 2026
https://github.com/bioconductor/genomicfeatures
Query the gene models of a given organism/assembly
bioconductor-package core-package
Last synced: 28 Apr 2025
https://github.com/bioconductor/iranges
Foundation of integer range manipulation in Bioconductor
bioconductor-package core-package
Last synced: 28 Apr 2025
https://github.com/bioconductor/variantannotation
Annotation of Genetic Variants
bioconductor-package core-package
Last synced: 28 Apr 2025
https://github.com/bioconductor/s4vectors
Foundation of vector-like and list-like containers in Bioconductor
bioconductor-package core-package
Last synced: 28 Apr 2025
https://github.com/bioconductor/annotationhub
Client for the Bioconductor AnnotationHub web resource
Last synced: 09 Jan 2026
https://github.com/Bioconductor/BiocStyle
Issues and pull requests for BiocStyle should go here.
bioconductor-package core-package
Last synced: 30 Jul 2025
https://github.com/bioconductor/biocstyle
Issues and pull requests for BiocStyle should go here.
bioconductor-package core-package
Last synced: 05 Apr 2025
https://github.com/bioconductor/biocgenerics
Defines many S4 generic functions used in Bioconductor
bioconductor-package core-package
Last synced: 28 Apr 2025
https://github.com/bioconductor/hdf5array
HDF5 datasets as array-like objects in R
bioconductor-package core-package
Last synced: 28 Apr 2025
https://github.com/bioconductor/matrixgenerics
S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects
bioconductor-package core-package
Last synced: 28 Apr 2025
https://github.com/Bioconductor/Rhtslib
HTSlib high-throughput sequencing library as an R package
bioconductor-package core-package
Last synced: 29 Jul 2025
https://github.com/bioconductor/rhtslib
HTSlib high-throughput sequencing library as an R package
bioconductor-package core-package
Last synced: 28 Apr 2025
https://github.com/bioconductor/genomicalignments
Representation and manipulation of short genomic alignments
bioconductor-package core-package
Last synced: 28 Apr 2025
https://github.com/bioconductor/experimenthub
Client to access ExperimentHub resources
Last synced: 28 Apr 2025
https://github.com/bioconductor/bsgenome
Software infrastructure for efficient representation of full genomes and their SNPs
bioconductor-package core-package
Last synced: 03 Sep 2025
https://github.com/bioconductor/shortread
bioconductor-package core-package
Last synced: 28 Apr 2025
https://github.com/bioconductor/biobase
Biobase: Base functions for Bioconductor
bioconductor-package core-package
Last synced: 05 Jul 2025
https://github.com/bioconductor/annotationdbi
Manipulation of SQLite-based annotations in Bioconductor
bioconductor-package core-package
Last synced: 28 Apr 2025
https://github.com/bioconductor/sparsearray
High-performance sparse data representation and manipulation in R
bioconductor-package core-package
Last synced: 28 Apr 2025
https://github.com/bioconductor/keggrest
Client-side REST access to KEGG
bioconductor-package core-package
Last synced: 28 Apr 2025
https://github.com/bioconductor/genefilter
genefilter: methods for filtering genes from high-throughput experiments
bioconductor-package core-package
Last synced: 28 Apr 2025
https://github.com/bioconductor/annotationforge
Tools for building SQLite-based annotation data packages
bioconductor-package core-package
Last synced: 28 Apr 2025
https://github.com/bioconductor/s4arrays
Foundation of array-like containers in Bioconductor
bioconductor-package core-package
Last synced: 28 Apr 2025
https://github.com/bioconductor/annotationfilter
Facilities for Filtering Bioconductor Annotation Resources
bioconductor-package core-package
Last synced: 28 Apr 2025
https://github.com/bioconductor/gseabase
Gene set enrichment data structures and methods
bioconductor-package core-package
Last synced: 28 Apr 2025
https://github.com/bioconductor/biocviews
Categorized views of R package repositories
bioconductor-package core-package
Last synced: 12 Sep 2025
https://github.com/bioconductor/raggedexperiment
Matrix-like representations of mutation and CN data
copynumber core-package data-structure mutations
Last synced: 28 Apr 2025
https://github.com/bioconductor/bsgenomeforge
Forge your own BSgenome data package
bioconductor-package core-package
Last synced: 28 Apr 2025
https://github.com/bioconductor/uniprot.ws
R Interface to UniProt Web Services
bioconductor-package core-package
Last synced: 28 Apr 2025
https://github.com/bioconductor/ensemblvep
R Interface to Ensembl Variant Effect Predictor
bioconductor-package core-package
Last synced: 28 Apr 2025
https://github.com/bioconductor/biocbaseutils
bioconductor-package core-package
Last synced: 28 Apr 2025
https://github.com/bioconductor/gostats
Tools for manipulating GO and microarrays.
bioconductor-package core-package
Last synced: 05 Feb 2026
https://github.com/bioconductor/graph
graph: A package to handle graph data structures
bioconductor-package core-package
Last synced: 20 Oct 2025
https://github.com/bioconductor/geneplotter
Graphics related functions for Bioconductor
bioconductor-package core-package
Last synced: 28 Apr 2025
https://github.com/bioconductor/xvector
Foundation of external vector representation and manipulation in Bioconductor
bioconductor-package core-package
Last synced: 23 Apr 2025
https://github.com/bioconductor/organism.dplyr
bioconductor-package core-package
Last synced: 27 Jun 2025
https://github.com/bioconductor/txdbmaker
A set of tools for making TxDb objects from genomic annotations from various sources (e.g. UCSC, Ensembl, and GFF files)
bioconductor-package core-package
Last synced: 28 Apr 2025
https://github.com/bioconductor/rbgl
An interface to the BOOST graph library
bioconductor-package core-package
Last synced: 04 Aug 2025
https://github.com/bioconductor/category
Category Analysis
bioconductor-package core-package
Last synced: 28 Apr 2025
https://github.com/bioconductor/genomicfiles
Distributed computing by file or by range
bioconductor-package core-package
Last synced: 28 Feb 2026
https://github.com/bioconductor/hypergraph
A package providing hypergraph data structures
bioconductor-package core-package
Last synced: 21 Nov 2025
https://github.com/bioconductor/biocio
Standard input / output framework for use by Bioconductor packages
bioconductor-package core-package
Last synced: 24 Feb 2026
https://github.com/bioconductor/updateobject
Find/fix old serialized S4 instances
bioconductor-package core-package
Last synced: 26 Feb 2025
https://github.com/bioconductor/biocversion
bioconductor-package core-package
Last synced: 01 Mar 2026
https://github.com/bioconductor/gpls
Classification using generalized partial least squares
bioconductor-package core-package
Last synced: 10 Jan 2026
https://github.com/bioconductor/biocset
Representing Different Biological Sets
bioconductor-package core-package
Last synced: 26 Feb 2025
https://github.com/bioconductor/ucsc.utils
Low-level utilities to retrieve data from the UCSC Genome Browser
bioconductor-package core-package
Last synced: 30 Oct 2025
https://github.com/bioconductor/icens
NPMLE for Censored and Truncated Data
bioconductor-package core-package
Last synced: 26 Feb 2025
https://github.com/bioconductor/rgalaxy
Make an R function available in the Galaxy web platform
bioconductor-package core-package
Last synced: 21 Jun 2025
https://github.com/bioconductor/chipseq
chipseq: A package for analyzing chipseq data
bioconductor-package core-package
Last synced: 10 Jan 2026
https://github.com/bioconductor/annotate
Annotation for microarrays
bioconductor-package core-package
Last synced: 04 Oct 2025
https://github.com/bioconductor/bioccasestudies
BiocCaseStudies: Support for the Case Studies Monograph
bioconductor-package core-package
Last synced: 07 Aug 2025
https://github.com/bioconductor/biodist
Different distance measures
bioconductor-package core-package
Last synced: 06 Jun 2026
https://github.com/bioconductor/zlibbioc
An R packaged zlib-1.2.5
bioconductor-package core-package
Last synced: 01 Apr 2026
https://github.com/bioconductor/cocitestats
Different test statistics based on co-citation.
bioconductor-package core-package
Last synced: 03 Jun 2026
https://github.com/bioconductor/ppistats
Protein-Protein Interaction Statistical Package
bioconductor-package core-package
Last synced: 15 May 2026
https://github.com/bioconductor/organismdbi
Software to enable the smooth interfacing of different database packages
bioconductor-package core-package
Last synced: 07 Sep 2025
https://github.com/bioconductor/experimenthubdata
Add resources to ExperimentHub
bioconductor-package core-package
Last synced: 28 Apr 2025
https://github.com/bioconductor/genemeta
MetaAnalysis for High Throughput Experiments
bioconductor-package core-package
Last synced: 28 Apr 2025
https://github.com/bioconductor/ensembl.utils
Low-level utilities to retrieve data from Ensembl
bioconductor-package core-package
Last synced: 26 Feb 2025
https://github.com/bioconductor/ncbi.utils
Low-level utilities to retrieve data from NCBI
bioconductor-package core-package
Last synced: 26 Feb 2026
https://github.com/bioconductor/annotationhubdata
Transform public data resources into Bioconductor Data Structures
Last synced: 28 Apr 2025
https://github.com/bioconductor/dyndoc
Dynamic document tools
bioconductor-package core-package
Last synced: 13 May 2026