Projects in Awesome Lists by Bioconductor
A curated list of projects in awesome lists by Bioconductor .
https://github.com/bioconductor/contributions
Contribute Packages to Bioconductor
Last synced: 14 Jun 2025
https://github.com/Bioconductor/Contributions
Contribute Packages to Bioconductor
Last synced: 09 May 2025
https://github.com/bioconductor/biocstickers
Stickers for some Bioconductor packages - feel free to contribute and/or modify.
Last synced: 12 Apr 2025
https://github.com/Bioconductor/BiocStickers
Stickers for some Bioconductor packages - feel free to contribute and/or modify.
Last synced: 09 May 2025
https://github.com/bioconductor/csama
Course material for CSAMA: Statistical Data Analysis for Genome Scale Biology
Last synced: 09 Feb 2026
https://github.com/Bioconductor/CSAMA
Course material for CSAMA: Statistical Data Analysis for Genome Scale Biology
Last synced: 09 May 2025
https://github.com/bioconductor/genomicdatacommons
Provide R access to the NCI Genomic Data Commons portal.
api-client bioconductor bioinformatics cancer core-services data-science genomics nci r tcga vignette
Last synced: 16 May 2025
https://github.com/bioconductor/learnbioconductor
Training material for introductory R / Bioconductor courses
Last synced: 20 Aug 2025
https://github.com/Bioconductor/LearnBioconductor
Training material for introductory R / Bioconductor courses
Last synced: 02 Apr 2025
https://github.com/bioconductor/biocmanager
CRAN Package For Managing Bioconductor Packages
Last synced: 15 May 2025
https://github.com/Bioconductor/BiocManager
CRAN Package For Managing Bioconductor Packages
Last synced: 30 Jul 2025
https://github.com/bioconductor/bioconductor_docker
Docker Containers for Bioconductor - NEW!
bioconductor bioconductor-containers docker-image
Last synced: 08 May 2025
https://github.com/bioconductor/biocparallel
Bioconductor facilities for parallel evaluation
bioconductor-package core-package u24ca289073
Last synced: 08 Apr 2025
https://github.com/bioconductor/orchestratingsinglecellanalysis
Content for the OSCA Book.
book book-base rna-seq single-cell single-cell-rna-seq
Last synced: 17 Jun 2025
https://github.com/bioconductor/biostrings
Efficient manipulation of biological strings
bioconductor-package core-package
Last synced: 09 Oct 2025
https://github.com/bioconductor/bioc_docker
[DEPRECATED] Docker containers for Bioconductor
Last synced: 27 Jun 2025
https://github.com/bioconductor/bioconductor-training
Bioconductor teaching and education committee
bioconductor committee education teaching training
Last synced: 27 Jan 2026
https://github.com/bioconductor/genomicranges
Representation and manipulation of genomic intervals
bioconductor-package core-package
Last synced: 09 Apr 2025
https://github.com/bioconductor/biocintro
Course material for introductory R / Bioconductor courses
Last synced: 27 Jul 2025
https://github.com/Bioconductor/BiocIntro
Course material for introductory R / Bioconductor courses
Last synced: 02 Apr 2025
https://github.com/bioconductor/googlegenomics
An R package for Google Genomics API queries.
bioconductor-packages core-package retired-package
Last synced: 26 Aug 2025
https://github.com/bioconductor/orchestratingsinglecellanalysis-release
An online companion to the OSCA manuscript demonstrating Bioconductor resources and workflows for single-cell RNA-seq analysis.
book book-release rna-seq single-cell single-cell-rna-seq
Last synced: 03 Mar 2026
https://github.com/bioconductor/genomeinfodb
Utilities for manipulating chromosome names, including modifying them to follow a particular naming style
bioconductor-package core-package
Last synced: 28 Apr 2025
https://github.com/bioconductor/summarizedexperiment
A container (S4 class) for matrix-like assays
bioconductor-package core-package
Last synced: 28 Apr 2025
https://github.com/bioconductor/delayedarray
A unified framework for working transparently with on-disk and in-memory array-like datasets
bioconductor-package core-package u24ca289073
Last synced: 03 Aug 2025
https://github.com/bioconductor/basilisk
Clone of the Bioconductor repository for the basilisk package.
Last synced: 28 Apr 2025
https://github.com/bioconductor/genomicfeatures
Query the gene models of a given organism/assembly
bioconductor-package core-package
Last synced: 28 Apr 2025
https://github.com/bioconductor/rsamtools
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
bioconductor-package core-package
Last synced: 09 Mar 2026
https://github.com/bioconductor/bioconductor_full
DEPRECATED - Docker Images which include a complete installation of all software needed to build all Bioconductor packages
bioconductor containers docker
Last synced: 28 Apr 2025
https://github.com/bioconductor/biocworkshops2019
The official repository of the Bioconductor 2019 Conference Workshops :confetti_ball:
Last synced: 26 Feb 2025
https://github.com/bioconductor/bioconductor.org
Source code for the Bioconductor website
Last synced: 26 Feb 2025
https://github.com/bioconductor/iranges
Foundation of integer range manipulation in Bioconductor
bioconductor-package core-package
Last synced: 28 Apr 2025
https://github.com/bioconductor/variantannotation
Annotation of Genetic Variants
bioconductor-package core-package
Last synced: 28 Apr 2025
https://github.com/bioconductor/copy-number-analysis
Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis
Last synced: 28 Apr 2025
https://github.com/bioconductor/biocadvanced
Advanced R / Bioconductor training material
Last synced: 26 Feb 2025
https://github.com/bioconductor/buildabiocworkshop
Template for building a bioconductor workshop package using github actions
Last synced: 12 Sep 2025
https://github.com/bioconductor/s4vectors
Foundation of vector-like and list-like containers in Bioconductor
bioconductor-package core-package
Last synced: 28 Apr 2025
https://github.com/bioconductor/usebioconductor
Training material for intermediate R / Bioconductor courses
Last synced: 28 Apr 2025
https://github.com/Bioconductor/UseBioconductor
Training material for intermediate R / Bioconductor courses
Last synced: 02 Apr 2025
https://github.com/bioconductor/annotationhub
Client for the Bioconductor AnnotationHub web resource
Last synced: 09 Jan 2026
https://github.com/bioconductor/bioc_git_transition
This python package is for transitioning bioconductor from SVN to git
Last synced: 28 Apr 2025
https://github.com/Bioconductor/BiocStyle
Issues and pull requests for BiocStyle should go here.
bioconductor-package core-package
Last synced: 30 Jul 2025
https://github.com/bioconductor/bioc2020
BioC2020: Where Software and Biology Connect
Last synced: 26 Feb 2025
https://github.com/bioconductor/biocgenerics
Defines many S4 generic functions used in Bioconductor
bioconductor-package core-package
Last synced: 28 Apr 2025
https://github.com/Bioconductor/biocblog
A Quarto blog for Bioconductor community
bioconductor blog community hacktoberfest hacktoberfest2022 quarto r
Last synced: 07 May 2025
https://github.com/bioconductor/biocstyle
Issues and pull requests for BiocStyle should go here.
bioconductor-package core-package
Last synced: 05 Apr 2025
https://github.com/bioconductor/tenxbrainanalysis
R scripts for analyzing the 1.3 million brain cell data set from 10X Genomics
Last synced: 20 Jul 2025
https://github.com/bioconductor/rhtslib
HTSlib high-throughput sequencing library as an R package
bioconductor-package core-package
Last synced: 28 Apr 2025
https://github.com/bioconductor/csama2015
Course material for CSAMA 2015: Statistics and Computing in Genome Data Science
Last synced: 01 Mar 2026
https://github.com/Bioconductor/CSAMA2015
Course material for CSAMA 2015: Statistics and Computing in Genome Data Science
Last synced: 02 Apr 2025
https://github.com/Bioconductor/Rhtslib
HTSlib high-throughput sequencing library as an R package
bioconductor-package core-package
Last synced: 29 Jul 2025
https://github.com/bioconductor/hdf5array
HDF5 datasets as array-like objects in R
bioconductor-package core-package
Last synced: 28 Apr 2025
https://github.com/bioconductor/matrixgenerics
S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects
bioconductor-package core-package
Last synced: 28 Apr 2025
https://github.com/bioconductor/experimenthub
Client to access ExperimentHub resources
Last synced: 28 Apr 2025
https://github.com/bioconductor/biocworkinggroups
Bioconductor working group guidelines. Also, a list of active, suggested, and inactive working groups for bioconductor for the community to volunteer to be apart of. The community is also welcome to suggest new working groups.
bioconductor book community guidelines working-group
Last synced: 17 Feb 2026
https://github.com/bioconductor/genomicalignments
Representation and manipulation of short genomic alignments
bioconductor-package core-package
Last synced: 28 Apr 2025
https://github.com/bioconductor/bioccheck
bioconductor-package core-services
Last synced: 05 Apr 2025
https://github.com/bioconductor/eurobioc2017
European Bioconductor Meeting 2017
Last synced: 28 Apr 2025
https://github.com/bioconductor/bsgenome
Software infrastructure for efficient representation of full genomes and their SNPs
bioconductor-package core-package
Last synced: 03 Sep 2025
https://github.com/bioconductor/hcabrowser
Browse the Human Cell Atlas data portal
Last synced: 28 Apr 2025
https://github.com/bioconductor/pkgrevdocs
Training Material for Community Reviewers
Last synced: 21 Nov 2025
https://github.com/bioconductor/sweave2rmd
A project for converting Bioconductor Sweave documents to Rmd
Last synced: 28 Apr 2025
https://github.com/bioconductor/shortread
bioconductor-package core-package
Last synced: 28 Apr 2025
https://github.com/Bioconductor/BiocCheck
bioconductor-package core-services
Last synced: 24 Apr 2025
https://github.com/bioconductor/biobase
Biobase: Base functions for Bioconductor
bioconductor-package core-package
Last synced: 05 Jul 2025
https://github.com/bioconductor/anvil
Interact with AnVIL and Leonardo projects
Last synced: 28 Apr 2025
https://github.com/bioconductor/biocgithubhelp
Notes and tips for using github with Biocondcutor
Last synced: 09 Mar 2026
https://github.com/bioconductor/tenxbraindata
An ExperimentHub package for the 1.3 million brain cell 10X single-cell RNA-seq data set.
Last synced: 01 Apr 2026
https://github.com/bioconductor/intermediater
Intermediate R course offered to members of RPCI / SUNY at Buffalo
Last synced: 26 Feb 2025
https://github.com/bioconductor/csama2016
Repository for CSAMA 2016 course material
Last synced: 17 Oct 2025
https://github.com/bioconductor/bioc2021
BioC2021: Where Software and Biology Connect
Last synced: 28 Apr 2025
https://github.com/bioconductor/biocinstaller
Install / Update Bioconductor, CRAN, and github Packages
bioconductor-package core-services retired-package
Last synced: 28 Apr 2025
https://github.com/bioconductor/keggrest
Client-side REST access to KEGG
bioconductor-package core-package
Last synced: 28 Apr 2025
https://github.com/bioconductor/bioc2019
BioC2019: Where Software and Biology Connect
Last synced: 26 Feb 2025
https://github.com/bioconductor/sparsearray
High-performance sparse data representation and manipulation in R
bioconductor-package core-package
Last synced: 28 Apr 2025
https://github.com/bioconductor/annotationdbi
Manipulation of SQLite-based annotations in Bioconductor
bioconductor-package core-package
Last synced: 28 Apr 2025
https://github.com/bioconductor/loomexperiment
A package to read, write, and manipulate loom files using LoomExperiments. Uses the loom file format from the Linnarson Lab. https://linnarssonlab.org/loompy/
Last synced: 28 Apr 2025
https://github.com/bioconductor/annotationfilter
Facilities for Filtering Bioconductor Annotation Resources
bioconductor-package core-package
Last synced: 28 Apr 2025
https://github.com/bioconductor/s4arrays
Foundation of array-like containers in Bioconductor
bioconductor-package core-package
Last synced: 28 Apr 2025
https://github.com/bioconductor/annotationforge
Tools for building SQLite-based annotation data packages
bioconductor-package core-package
Last synced: 28 Apr 2025
https://github.com/bioconductor/gse62944
Experiment Data Package for TCGA processed RNA-Seq data
Last synced: 09 Jul 2025
https://github.com/bioconductor/workshop-contributions
Repository for managing contributions to workshop.bioconductor.org
Last synced: 15 Aug 2025
https://github.com/bioconductor/genefilter
genefilter: methods for filtering genes from high-throughput experiments
bioconductor-package core-package
Last synced: 28 Apr 2025
https://github.com/bioconductor/bioc2018
BioC 2018: Where Software and Biology Connect
Last synced: 26 Feb 2025
https://github.com/bioconductor/gostats
Tools for manipulating GO and microarrays.
bioconductor-package core-package
Last synced: 05 Feb 2026
https://github.com/bioconductor/eurobioc2022
European Bioconductor conference website 2022
Last synced: 28 Apr 2025
https://github.com/bioconductor/bioc2015introduction
Introduction to R and Bioconductor session at BioC2015 July 20-22, Seattle, Wa
Last synced: 26 Feb 2025
https://github.com/bioconductor/raggedexperiment
Matrix-like representations of mutation and CN data
copynumber core-package data-structure mutations
Last synced: 28 Apr 2025
https://github.com/bioconductor/bioc2u
Building containers and holding some code for bioc2u, an attempt at extending r2u to all bioc packages, and provide precompiled binaries for ubuntu systems
Last synced: 08 Oct 2025
https://github.com/bioconductor/biocviews
Categorized views of R package repositories
bioconductor-package core-package
Last synced: 12 Sep 2025
https://github.com/bioconductor/gseabase
Gene set enrichment data structures and methods
bioconductor-package core-package
Last synced: 28 Apr 2025
https://github.com/bioconductor/ensemblvep
R Interface to Ensembl Variant Effect Predictor
bioconductor-package core-package
Last synced: 28 Apr 2025
https://github.com/bioconductor/bioconductorannotationpipeline
build and push Bioconductor annotation packages
Last synced: 28 Apr 2025