Projects in Awesome Lists tagged with refseq | Ecosyste.ms: Awesome

Projects in Awesome Lists tagged with refseq

A curated list of projects in awesome lists tagged with refseq .

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https://github.com/pirovc/genome_updater

Bash script to download/update snapshots of files from NCBI genomes repository (refseq/genbank) with track of changes and without redundancy

bash bioinformatics database download genbank genome genomes genomics ncbi refseq sequence

Last synced: 28 Feb 2026

https://github.com/pirovc/ganon

ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierarchical classification, customized reporting and more

bioinformatics bloom-filter genbank gtdb k-mer metagenomics microbiome minimizers ncbi refseq taxonomy

Last synced: 28 Feb 2026

https://github.com/oschwengers/referenceseeker

Rapid determination of appropriate reference genomes.

ani bioinformatics mash microbiology reference-genomes refseq wgs

Last synced: 20 Aug 2025

https://github.com/muellan/metacache

memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping

bioinformatics bioinformatics-algorithms bioinformatics-tool classification dna-sequences fasta fastq genome genomic-data-analysis long-reads metagenomes metagenomic-analysis metagenomic-classification metagenomic-data metagenomics ncbi-refseq read-mapping refseq short-read-mapper taxonomy

Last synced: 09 Apr 2025

https://github.com/g-insana/ortho2tree

Pipeline for the selection of canonical proteins for reference proteomes

canonical isoforms msa proteomes refseq uniprot

Last synced: 09 Mar 2026