https://github.com/aristoteleo/pantheon-cli

Pantheon-CLI, our first release of PantheonOS, the AgentOS that re-imagines Science

agent agentos cli pantheonos singlecell spatial-transcriptomics

Last synced: 20 Feb 2026

https://github.com/pinellolab/scatac-benchmarking

Benchmarking computational single cell ATAC-seq methods

atac-seq bash benchmark jupyternotebook python r reproducible singlecell

Last synced: 03 Jul 2025

https://github.com/pinellolab/stream

STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data

lineage python scatac-seq scrna-seq singlecell trajectory visualization

Last synced: 03 Jul 2025

https://github.com/pinellolab/scATAC-benchmarking

Benchmarking computational single cell ATAC-seq methods

atac-seq bash benchmark jupyternotebook python r reproducible singlecell

Last synced: 11 May 2025

https://github.com/fabilab/northstar

Single cell type annotation guided by cell atlases, with freedom to be queer

cell-atlas clustering leidenalg scrna-seq scrna-seq-analysis singlecell

Last synced: 16 Jan 2026

https://github.com/debsin/dropClust

Version 2.1.0 released

cluster-analysis clustering genomics lsh-forest pca rna-seq singlecell

Last synced: 08 Apr 2025

https://github.com/IMB-Computational-Genomics-Lab/ascend

R package - Analysis of Single Cell Expression, Normalisation and Differential expression (ascend)

r rpackages scrna-seq-analysis scrnaseq singlecell

Last synced: 08 Apr 2025

https://github.com/bluebrain/bluepyemodel

Blue Brain Python Electrical Modeling Pipeline

analyse build emodel modelling neuron neuroscience optimisation parameter python simulation singlecell visualise workflow

Last synced: 14 May 2025

https://github.com/aksarkar/singlecell-ideas

singlecell

Last synced: 19 May 2026

https://github.com/genepattern/conos.visualizegeneexpression

Visualize expression of genes of interest after Conos.Cluster has been ran.

genepattern-module single-cell singlecell

Last synced: 20 Feb 2026