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An open API service indexing awesome lists of open source software.

Projects in Awesome Lists by BiocPy

A curated list of projects in awesome lists by BiocPy .

https://github.com/biocpy/rds2py

Read RDS files, in Python

python r

Last synced: 23 Apr 2025

https://github.com/biocpy/genomicranges

Container class to represent genomic locations and support genomic analysis

genomicranges

Last synced: 21 Aug 2025

https://github.com/biocpy/singlecellexperiment

Container class for single-cell experiments

singlecellexperiment

Last synced: 23 Apr 2025

https://github.com/SingleR-inc/singler-py

Python bindings to the SingleR algorithm

Last synced: 22 Jul 2025

https://github.com/biocpy/multiassayexperiment

Container class to represent and manage multi-omics genomic experiments

multiassayexperiment

Last synced: 23 Apr 2025

https://github.com/biocpy/summarizedexperiment

Container class for genomic experiments

summarizedexperiment

Last synced: 08 Sep 2025

https://github.com/biocpy/biocframe

Bioconductor-like data frames

dataframe

Last synced: 23 Apr 2025

https://github.com/biocpy/iranges

IRanges in Python

interval-arithmetic iranges

Last synced: 23 Apr 2025

https://github.com/biocpy/spatialexperiment

Container for Spatial Experiments

spatial-data

Last synced: 11 Apr 2025

https://github.com/biocpy/biocpy

Interface to all BiocPy packages

biocpy

Last synced: 23 Apr 2025

https://github.com/CellArr/cellarr

Store collections of experimental data based on TileDB

ml tiledb

Last synced: 22 Jul 2025

https://github.com/biocpy/tutorial

tutorial for all bioconductor representations in Python

biocpy

Last synced: 29 Oct 2025

https://github.com/biocpy/pybiocfilecache

Python implementation of the BiocFileCache R package

cache

Last synced: 03 Jan 2026

https://github.com/biocpy/biocsetup

Quickly setup new BiocPy packages

Last synced: 12 May 2025

https://github.com/biocpy/txdb

Access TxDB Annotation objects

genome-annotation genomicranges txdb

Last synced: 14 Jan 2026

https://github.com/biocpy/scrnaseq

Collection of public single-cell RNA-seq datasets

Last synced: 09 Aug 2025

https://github.com/biocpy/biocborn

bioc objects + seaborn

Last synced: 22 Mar 2025

https://github.com/biocpy/biorat

Last synced: 16 Oct 2025

https://github.com/SingleR-inc/celldex-py

Collection of reference cell type datasets

single-cell

Last synced: 22 Jul 2025

https://github.com/biocpy/tiledbarray

TileDB backed delayed arrays for Python

delayedarray tiledb

Last synced: 12 Jul 2025

https://github.com/BiocPy/mopsy

Matrix operations

matrix numpy scipy

Last synced: 03 Oct 2025

https://github.com/biocpy/biocutils

Miscellaneous utilities for BiocPy, mostly to mimic base functionality in R.

Last synced: 22 Mar 2025

https://github.com/biocpy/.github

Last synced: 05 Jan 2026

https://github.com/biocpy/mopsy

Matrix operations

matrix numpy scipy

Last synced: 23 Nov 2025

https://github.com/biocpy/delayedarray

DelayedArrays, in Python

delayedarray

Last synced: 23 Apr 2025

https://github.com/biocpy/hdf5array

HDF5 File-backed arrays for Python

delayedarray hdf5

Last synced: 05 Sep 2025

https://github.com/biocpy/cpptypes

Automatically generate wrappers for ctypes with C++

Last synced: 10 Oct 2025

https://github.com/biocpy/assorthead

Assorted C++ headers, vendored into a Python package.

Last synced: 26 Oct 2025

https://github.com/biocpy/environments

Conda configurations for managing BiocPy releases

Last synced: 12 Oct 2025