Projects in Awesome Lists by CompOmics
A curated list of projects in awesome lists by CompOmics .
https://github.com/compomics/meta-proteome-analyzer
MetaProteomeAnalyzer (MPA) software for analyzing and visualizing MS-based metaproteomics data.
bioinformatics-pipeline database-searchtool metaproteomics protein-identification proteomics software
Last synced: 10 Feb 2026
https://github.com/compomics/thermorawfileparsergui
Graphical user interface for the ThermoRawFileParser
conversion java proteomics raw
Last synced: 10 Feb 2026
https://github.com/compomics/scop3d
Sequence conservation of protein on 3D structure.
Last synced: 10 Feb 2026
https://github.com/compomics/colims
A lims system to automate and expedite proteomics data management, processing and analysis.
Last synced: 10 Feb 2026
https://github.com/compomics/pout2prot
Pout2Prot converts Percolator output files to protein group and subgroup files using Occam's razor or anti-Occam's razor. These output files can directly be used in Prophane for further downstream taxonomic and functional analysis
bioinformatics metaproteomics protein-inference proteomics
Last synced: 10 Feb 2026
https://github.com/compomics/mumble
Finding the perfect modification for your mass shift
Last synced: 10 Feb 2026
https://github.com/compomics/fragmentation-analyzer
A standalone java tool for analyzing ms/ms fragmentation data.
bioinformatics fragmentation proteomics
Last synced: 10 Feb 2026
https://github.com/compomics/reporter
Protein quantification based on reporter ions
bioinformatics protein-quantification proteomics reporter-ions
Last synced: 10 Feb 2026
https://github.com/compomics/mascotdatfile
Java API for MS/MS search results by Mascot (Matrix Science).
bioinformatics mascot proteomics
Last synced: 10 Feb 2026
https://github.com/compomics/icelogo
Next-generation visualization of protein consensus sequences by iceLogo.
Last synced: 10 Feb 2026
https://github.com/compomics/thermo-msf-parser
Parser and viewer for thermo msf files.
Last synced: 10 Feb 2026
https://github.com/compomics/ms-lims
Mass spectrometry based proteomics information management system.
Last synced: 10 Feb 2026
https://github.com/compomics/ms2rescore-rs
Rust functionality for the MS²Rescore package
Last synced: 10 Feb 2026
https://github.com/compomics/pride-asa-pipeline
Uniform annotation of identified spectra.
Last synced: 10 Feb 2026
https://github.com/compomics/intro-to-deep-learning
Practical introduction to neural networks with Pytorch and Lightning
convolutional-neural-networks lightning neural-networks pytorch recurrent-neural-networks tutorial
Last synced: 10 Feb 2026
https://github.com/compomics/xtandem-parser
Java-based parser for X!Tandem output xml files
bioinformatics proteomics xtandem
Last synced: 10 Feb 2026
https://github.com/compomics/electron-vue-python-boilerplate
Boilerplate to create desktop applications with electron, Vue3 and FastAPI
Last synced: 10 Feb 2026
https://github.com/compomics/omssa-parser
Java based parser for OMSSA OMX files
bioinformatics omssa proteomics
Last synced: 10 Feb 2026
https://github.com/compomics/compomics-sigpep
Predicting peptide signatures for targeted proteomics.
Last synced: 10 Feb 2026
https://github.com/compomics/oui-discovery
Collaboration between CompOmics & OpenProt group
Last synced: 10 Feb 2026
https://github.com/compomics/peptide-shaker-2.0-issue-tracker
Issue tracker for the beta release of PeptideShaker 2.0
Last synced: 10 Feb 2026
https://github.com/compomics/icelogoserver
The server edition of the iceLogo tool.
Last synced: 10 Feb 2026
https://github.com/compomics/ideeplc
iDeepLC: A deep Learning-based retention time predictor for unseen modified peptides with a novel encoding system
Last synced: 10 Feb 2026