Projects in Awesome Lists by VEuPathDB
A curated list of projects in awesome lists by VEuPathDB .
https://github.com/veupathdb/web-monorepo
A monorepo that contains all frontend code for VEuPathDB websites
Last synced: 07 May 2026
https://github.com/VEuPathDB/gente
A web application for self-service LDAP password changes
Last synced: 03 Apr 2025
https://github.com/veupathdb/lib-gradle-container-utils
Build Utils for VEuPathDB containerized Gradle projects.
build gradle gradle-plugin library
Last synced: 23 Feb 2026
https://github.com/veupathdb/repeat-masker-nextflow
nextflow workflow to modernize current repeatMasker workflow steps
Last synced: 16 Feb 2026
https://github.com/veupathdb/dataset-curator
This repository contains tools and standard operating procedures (SOPs) for processing new datasets for VEuPathDB resources.
Last synced: 18 Feb 2026
https://github.com/veupathdb/vdi-compose-stack
VDI service stack compose files and configuration.
Last synced: 18 Feb 2026
https://github.com/veupathdb/trf-nextflow
nextflow workflow for tandem repeats finder
Last synced: 19 Feb 2026
https://github.com/veupathdb/docker-alpine-dev-base
Alpine Linux image with Oracle Instant Client and a JDK installation.
Last synced: 11 Feb 2026
https://github.com/veupathdb/service-multi-blast
Async BLAST+ query service and supporting libraries.
blast fasta library ncbi ncbi-blast query service
Last synced: 06 Aug 2025
https://github.com/veupathdb/docker-dev-minio
Moddable, Alpine-based MinIO docker image.
Last synced: 20 Jun 2026
https://github.com/veupathdb/lib-jpath-request-validation
Tools for validating JSON requests in JaxRS container services.
Last synced: 28 Apr 2026
https://github.com/veupathdb/checkforupdate-nextflow
Workflow for determining which proteomes have changed since last run
Last synced: 05 Sep 2025
https://github.com/veupathdb/lib-jaxrs-container-core
Core library for VEuPathDB JaxRS container services
Last synced: 05 Oct 2025
https://github.com/veupathdb/ebi2gus
Code related to representing data from E! Core workflow in GUS schema
Last synced: 08 Oct 2025
https://github.com/veupathdb/puppet-ebrc_jenkins
Puppet module to install Jenkins following EBRC-specific specifications.
Last synced: 08 Oct 2025
https://github.com/veupathdb/puppet-oradb_ext
Installs systemd service files to start Oracle listener and database server
Last synced: 09 Oct 2025
https://github.com/veupathdb/docker-gus-apidb-base
Docker image definition for an image that contains the GUS model objects and the ApiDB schema loaded in postgres.
apidb docker gus java perl postgresql
Last synced: 10 Oct 2025
https://github.com/veupathdb/veupath-redmine-client
Simplified API to interact with VeupathDB Redmine, for EBI operations
Last synced: 13 Oct 2025
https://github.com/veupathdb/array-probes-nextflow
Map Expression and Genomic (chipchip/cgh) array probes to a genome
Last synced: 19 Oct 2025
https://github.com/veupathdb/puppet-ebrc_httpd_setup
Puppet module to manage Apache HTTPD per EuPathDB specs
Last synced: 01 Jun 2026
https://github.com/veupathdb/hmmer-nextflow
Containerized nextflow workflow to replace interproscan
Last synced: 25 Feb 2026
https://github.com/veupathdb/docker-galaxy-python-tools
Docker image containing the necessary Python2 and C Lib prerequisites to run the EuPathGalaxy python tools.
Last synced: 08 Feb 2026
https://github.com/veupathdb/blat-nextflow
Nextflow Conversion of GenomeAlignWithGfClientTask
Last synced: 08 Feb 2026
https://github.com/veupathdb/ngs-samples-nextflow
Fetch ngs samples from SRA if needed and/or prepare samplesheet for further processing
Last synced: 09 Feb 2026
https://github.com/veupathdb/vagrant-workflow-software
simulation environment for deployment of EuPathDB workflow software
Last synced: 09 Feb 2026
https://github.com/veupathdb/expression-shepherd
Wrangling our expression data with gpt-4o
Last synced: 09 Feb 2026
https://github.com/veupathdb/workflow-vdi
NextFlow workflow to be called by ReFlow workflow that creates and submits artifacts to VDI
Last synced: 09 Feb 2026
https://github.com/veupathdb/psipred-nextflow
Nextflow Workflow for moving away from DJOB
Last synced: 09 Feb 2026
https://github.com/veupathdb/edauserservice
An EDA service that tracks user state
Last synced: 10 Feb 2026
https://github.com/veupathdb/puppet-globus_connect_server
Puppet module for Globus Connect Server
Last synced: 11 Feb 2026
https://github.com/veupathdb/ansible-tomcat_instance
Ansible roles for EuPathDB
Last synced: 11 Feb 2026
https://github.com/veupathdb/bowtie-mapping-nextflow
Nextflow conversion of BowtieMappingTask
Last synced: 12 Feb 2026
https://github.com/veupathdb/ghanaworkshop
ClinEpiDB ISCB-Africa workshop materials
Last synced: 15 Feb 2026
https://github.com/veupathdb/diagrams
Source code for diagrams made with tools such as diagrams.net (formerly draw.io)
Last synced: 02 Mar 2026
https://github.com/veupathdb/job-approve-eligible-access-requests
Job to execute dataset approval endpoint on a schedule
Last synced: 10 Feb 2026
https://github.com/veupathdb/tool-java-maven-template
Template starter repo for a Java tool that uses Maven, Oracle DB, fgputil-db
Last synced: 09 Sep 2025
https://github.com/veupathdb/singularity-craig
Singularity recipe for CraiG
Last synced: 09 Feb 2026
https://github.com/veupathdb/lib-jvm-blast
blast cli json kotlin library serialization
Last synced: 18 May 2026