Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
Projects in Awesome Lists by saketkc
A curated list of projects in awesome lists by saketkc .
https://github.com/saketkc/fos-proposals
:gift_heart: :penguin: Archive of GSoC proposals
fos-proposals foss gsoc open-source proposal
Last synced: 15 Oct 2024
https://github.com/saketkc/pysradb
Package for fetching metadata and downloading data from SRA/ENA/GEO
bioinformatics bioinformatics-pipeline ena ncbi-sra ncbi-sra-archive sra sratoolkit
Last synced: 15 Oct 2024
https://github.com/saketkc/gencode_regions
Extract 3'UTR, 5'UTR, CDS, Promoter, Genes, Introns, Exons from GTF files
cds exon gencode-files gencode-regions gene gtf-reader promoters utr
Last synced: 08 Nov 2024
https://github.com/saketkc/rna-seq-snakemake
Snakemake based pipeline for RNA-Seq analysis
bioinformatics pipeline rna-seq-analysis rna-seq-snakemake snakemake
Last synced: 08 Nov 2024
https://github.com/saketkc/pyseqlogo
Python package to plot sequence logos
motif motif-analysis sequence-logo tfs
Last synced: 08 Nov 2024
https://github.com/saketkc/riboraptor
Tool for ribo-seq analysis. Most of the functionality moved to ribotricer (https://github.com/smithlabcode/ribotricer)
bioinformatics bioinformatics-pipeline genomics riboseq ribosome-profiling snakemake
Last synced: 15 Oct 2024
https://github.com/saketkc/moca
:m: Tool for motif conservation analysis
bioinformatics chip-seq motif-discovery transcription-factor-binding transcription-factors
Last synced: 15 Oct 2024
https://github.com/saketkc/notebooks
:green_book: Jupyter notebooks for demo/projects, now that github supports them
jupyter-notebook notebook rmarkdown
Last synced: 15 Oct 2024
https://github.com/saketkc/variational-autoencoders-tf-eager
Variational autoencoders using Tensorflow's eager API
Last synced: 15 Oct 2024
https://github.com/saketkc/scrna_nb_comparison
Scripts to reproduce the analyses in the paper "Comparison and evaluation of statistical error models for scRNA-seq"
Last synced: 15 Oct 2024
https://github.com/saketkc/sklearn-hogsvd
Scikit-learn compatible python implementation of HO-GSVD
Last synced: 15 Oct 2024
https://github.com/saketkc/pyvirchow
Tools for whole slide image processing and classification
Last synced: 15 Oct 2024
https://github.com/saketkc/covmuller
Covmuller is an R-package designed for analysis of SARS-CoV-2 sequencing metadata deposited on GISAID
Last synced: 15 Oct 2024
https://github.com/saketkc/pyflglm
generalized-linear-models glm statsmodels
Last synced: 15 Oct 2024
https://github.com/saketkc/rnn-cds-prediction
Prediction of CDS regions using RNNs
Last synced: 15 Oct 2024
https://github.com/saketkc/ribo-seq-snakemake
Snakemake pipeline for Ribo-Seq analysis
riboseq ribosome-profiling snakemake
Last synced: 15 Oct 2024
https://github.com/saketkc/moca_web
:m: Code for MOtif Conservation Analysis
Last synced: 15 Oct 2024
https://github.com/saketkc/pivotal_email_tracker_bot
Send Stories to pivotal through emails !
Last synced: 15 Oct 2024
https://github.com/saketkc/math-screening-solutions
:green_book: :mortar_board: Solutions for MATH Screening Exams
Last synced: 15 Oct 2024
https://github.com/saketkc/re-ribo-smk
Snakemake pipeline for end-to-end Ribo-seq analysis
Last synced: 15 Oct 2024
https://github.com/saketkc/rss-graduate-diploma-solutions
Solutions to Royal Statistical Society's Graduate Diploma in Statistics Examination
Last synced: 15 Oct 2024
https://github.com/saketkc/pyfastnbfit
Fast fitting for counts data using Minka's algorithm
Last synced: 15 Oct 2024
https://github.com/saketkc/2020_mcsk
Code for Global Translational Landscape of the Candida albicans Morphological Transition
Last synced: 15 Oct 2024
https://github.com/saketkc/saketkc.github.io.archived
Soure code for http://saket-choudhary.me
Last synced: 15 Oct 2024
https://github.com/saketkc/armpy
Examples reproduced from ARM from Hill and Gelman
Last synced: 15 Oct 2024
https://github.com/saketkc/weatherunion
R package to fetch temperature, wind soeed, precipitation and related information from Zomato's weatherunion.com API.
Last synced: 15 Oct 2024
https://github.com/saketkc/seenunseencap
Captions for 'The Seen and the Unseen' podcast by Amit Varma
Last synced: 15 Oct 2024
https://github.com/saketkc/bisc-104
Teaching material used for BISC-104L[Fall 2016] at USC Edit
Last synced: 15 Oct 2024
https://github.com/saketkc/usc-math-541a-screening-solutions
Solutions to USC's MATH-541A Screening Exams
Last synced: 15 Oct 2024
https://github.com/saketkc/ribopod
A database of uniformly processed Ribo-seq datasets
Last synced: 15 Oct 2024
https://github.com/saketkc/usc-math-541b-screening-solutions
Solutions to USC's MATH-541b Screening Exams
Last synced: 15 Oct 2024
https://github.com/saketkc/ugc-predatory-journal-analysis
UGC's preferred list is predatory
Last synced: 15 Oct 2024
https://github.com/saketkc/parsebioscience_barcodes_corrector
Scripts to generate corrected barcodes list for a list of custom barcodes for ParseBiosciences kit
Last synced: 15 Oct 2024
https://github.com/saketkc/usc-math-505a-screening-solutions
Solutions to USC's MATH-505A Screening Exams
bookdown math rstudio statistics
Last synced: 15 Oct 2024
https://github.com/saketkc/pyro-rethinking
Statistical Rethinking with Pyro
Last synced: 15 Oct 2024
https://github.com/saketkc/genomeofindia
Scripts for GenomeOfIndia substack
Last synced: 15 Oct 2024
https://github.com/saketkc/calculate_mappability
Calculate mappability for hg38/mm10
Last synced: 15 Oct 2024