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Projects in Awesome Lists tagged with transcription-factors
A curated list of projects in awesome lists tagged with transcription-factors .
https://github.com/slowkow/tftargets
:dart: Human transcription factor target genes from 6 databases in convenient R format.
bioinformatics data rstats transcription-factors
Last synced: 15 Oct 2024
https://github.com/lucidrains/tf-bind-transformer
A repository with exploration into using transformers to predict DNA ↔ transcription factor binding
artificial-intelligence attention-mechanism deep-learning gene-expression transcription-factor-binding transcription-factors transformers
Last synced: 19 Dec 2024
https://github.com/slowkow/centipede.tutorial
:bug: How to use CENTIPEDE to determine if a transcription factor is bound.
bioinformatics dnase-seq enrichment rstats transcription-factors tutorial
Last synced: 15 Oct 2024
https://github.com/slowkow/homerkit
Read HOMER motif analysis output in R.
bioinformatics enrichment rstats transcription-factors
Last synced: 15 Oct 2024
https://github.com/drewwiens/tensorflow-dnns-for-predicting-dna-transcription-factor-binding
Deep neural networks implemented in TensorFlow & Python for predicting whether transcription factors will bind to given DNA sequences
bioinformatics deep-neural-networks dna-sequences machine-learning tensorflow transcription-factors
Last synced: 01 Dec 2024
https://github.com/seqcode/cross-species-domain-adaptation
Codebase for the domain adaptation (cross-species TF binding prediction) project.
comparative-genomics deep-learning domain-adaptation genomics transcription-factors
Last synced: 09 Nov 2024
https://github.com/saketkc/moca
:m: Tool for motif conservation analysis
bioinformatics chip-seq motif-discovery transcription-factor-binding transcription-factors
Last synced: 04 Dec 2024
https://github.com/mbelmadani/motifgp
Motif discovery for DNA sequences using multiobjective optimization and genetic programming.
bioinformatics chip-seq deap dna dna-sequences genetic-programming jaspar motif motif-discovery multiobjective-optimization network-expressions nsga-ii pareto-front python regular-expressions sequences strongly-typed transcription-factor-binding transcription-factors
Last synced: 09 Nov 2024
https://github.com/mahshaaban/target
target: An R Package to Predict Combined Function of Transcription Factors
algorithm chip-seq dna-binding gene-regulation r-package transcription-factors
Last synced: 11 Nov 2024
https://github.com/henneberger/deepsea
Unofficial fork of the DeepSEA deep learning genomics project
deep-learning genomics transcription-factors
Last synced: 15 Nov 2024
https://github.com/mahshaaban/integratingdatabioc
Source code for the Bioconductor workshop "Integrating gene expression and DNA-binding data using R/Bioconductor"
bioconductor-packages chip-seq gene-expression rna-se transcription-factors
Last synced: 11 Nov 2024
https://github.com/jletey/pobt
Patterns of Binding Targets
chromosome transcription transcription-factors
Last synced: 06 Nov 2024
https://github.com/sam-k/dna-repair-tf
Genomic analysis of decreased DNA repair at TF-binding sites.
cancer dataset dna genomics transcription-factors
Last synced: 29 Nov 2024
https://github.com/mahshaaban/sqlome
Build SQLite tables of microRNAs and Transcription Factors-gene Correlations
microrna r sqlite-database transcription-factors
Last synced: 11 Nov 2024
https://github.com/mahshaaban/targetflow
target: An R Package to Predict Combined Function of Transcription Factors (workflow article)
chipseq r-package transcription-factors workflow
Last synced: 11 Nov 2024
https://github.com/mahshaaban/cregulomedb
Build the database file for cRegulome package
cancer-genomics databases datascience microrna r tcga-data transcription-factors
Last synced: 11 Nov 2024