Projects in Awesome Lists tagged with batch-effects
A curated list of projects in awesome lists tagged with batch-effects .
https://github.com/zhangyuqing/combat-seq
Batch effect adjustment based on negative binomial regression for RNA sequencing count data
batch-effects negative-binomial-regression rna-seq
Last synced: 30 Oct 2025
https://github.com/theislab/kbet
An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.
batch-effects data-science quantification scrnaseq
Last synced: 11 Oct 2025
https://github.com/thierrygosselin/radiator
RADseq Data Exploration, Manipulation and Visualization using R
artifacts-detection batch-effects filter gbs genetics genomic-data-analysis genomics genomics-visualization genotype-likelihoods genotyping-by-sequencing heterozygosity imputation missingness normalization outliers outliers-detection paralogs radseq radseq-data visualization
Last synced: 11 Aug 2025
https://github.com/jumphone/beer
BEER: Batch EffEct Remover for single-cell data
batch-effects scatac-seq scrna-seq single-cell-analysis umap
Last synced: 14 May 2025
https://github.com/tengfei-emory/scbatch
Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment
Last synced: 04 Apr 2025
https://github.com/tengfei-emory/quantnorm
Mitigating the adverse impact of batch effects in sample pattern detection
Last synced: 25 Aug 2025
https://github.com/uds-helms/beclear
Correction of batch effects in DNA methylation data
batch-effects bioconductor-package dna-methylation latent-factor-model methylation missing-data missing-values rpackage stochastic-gradient-descent
Last synced: 20 Feb 2026
https://github.com/pavlin-policar/alra
Imputation method for scRNA-seq based on low-rank approximation
batch-effects imputation matrix-completion scrna-seq svd
Last synced: 15 Aug 2025
https://github.com/genepattern/combat_seq
Batch effect adjustment based on negative binomial regression for RNA sequencing count data. Credits: https://github.com/zhangyuqing/ComBat-seq
batch-effects genepattern-module negative-binomial-regression rna-seq
Last synced: 20 Feb 2026
