Projects in Awesome Lists tagged with genotype-likelihoods
A curated list of projects in awesome lists tagged with genotype-likelihoods .
https://github.com/thierrygosselin/radiator
RADseq Data Exploration, Manipulation and Visualization using R
artifacts-detection batch-effects filter gbs genetics genomic-data-analysis genomics genomics-visualization genotype-likelihoods genotyping-by-sequencing heterozygosity imputation missingness normalization outliers outliers-detection paralogs radseq radseq-data visualization
Last synced: 13 Dec 2024
https://github.com/fgvieira/ngsld
Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework
genotype-likelihoods ld ngs population-genomics
Last synced: 01 Dec 2024
https://github.com/thierrygosselin/stackr
stackr: an R package to run stacks software pipeline
filter gbs genetics genomic-data-analysis genomics genomics-visualization genotype-likelihoods genotyping-by-sequencing rad radseq radseq-data stackr
Last synced: 04 Dec 2024
https://github.com/fgvieira/ngsf
Estimation of per-individual inbreeding coefficients under a probabilistic framework
genotype-likelihoods inbreeding ngs population-genomics
Last synced: 01 Dec 2024
https://github.com/pblischak/polyploid-genotyping
SNP genotyping in polyploids
bioinformatics cpp11 genotype-likelihoods manuscript population-genetics rcpp snp-genotyping
Last synced: 09 Apr 2025
https://github.com/fgvieira/ngsf-hmm
Estimation of per-individual inbreeding tracts under a probabilistic framework
genotype-likelihoods hmm inbreeding ngs population-genomics
Last synced: 01 Dec 2024
https://github.com/fgvieira/ngsdist
Estimation of pairwise distances under a probabilistic framework
genetic-distances genotype-likelihoods ngs population-genomics
Last synced: 01 Dec 2024