Projects in Awesome Lists by pblischak
A curated list of projects in awesome lists by pblischak .
https://github.com/pblischak/hyde
Hybridization detection using phylogenetic invariants
cython hybridization phylogenetic-networks phylogenomics python-package
Last synced: 06 Apr 2025
https://github.com/pblischak/polyploid-genotyping
SNP genotyping in polyploids
bioinformatics cpp11 genotype-likelihoods manuscript population-genetics rcpp snp-genotyping
Last synced: 09 Apr 2025
https://github.com/pblischak/boost-docker-test
Test program for compiling/linking with the Boost C++ Libraries to create a Docker image
boost cpp docker-image dockerfile
Last synced: 09 Apr 2025
https://github.com/pblischak/hyde-cnn
Hybridization Detection with Convolutional Neural Networks
convolutional-neural-networks deep-learning hybridization phylogenomics python3
Last synced: 09 Apr 2025
https://github.com/pblischak/zprob
A Zig Module for Random Number Distributions
module probability random-sampling statistics zig
Last synced: 09 Apr 2025
https://github.com/pblischak/polyploid-demography
Demographic Inference in Polyploids
Last synced: 09 Apr 2025
https://github.com/pblischak/approximate_bayes
A worked example of approximate Bayesian computation in R
Last synced: 17 Feb 2025
https://github.com/pblischak/inbreeding-sfs
SFS-Based Demographic Inference with Inbreeding
Last synced: 15 May 2025
https://github.com/pblischak/polyfreqs
polyfreqs: an R package for Bayesian population genomics in autopolyploids
bayesian-population-genomics c-plus-plus cran genotype r rcpp
Last synced: 15 May 2025
https://github.com/pblischak/fluidigm2purc
Automated processing and haplotype inference for double-barcoded PCR amplicons
fluidigm high-throughput-sequencing phylogenomics polyploid
Last synced: 15 May 2025
https://github.com/pblischak/zig-ndarray
N-Dimensional Arrays in Zig
data-science ndarray statistics ziglang
Last synced: 27 Mar 2025
https://github.com/pblischak/pretty-pileup
Pretty Printing for SAMtools Pileups
Last synced: 15 May 2025
https://github.com/pblischak/evol2017
Tutorial, code, and data for Evolution 2017
hybridization jupyter-notebook python27 tutorial
Last synced: 15 May 2025
https://github.com/pblischak/polyfreqs-ms-data
Data, scripts and doc files for polyfreqs manuscript
Last synced: 15 May 2025
https://github.com/pblischak/hyde-docker
Docker image for automated build of HyDe
Last synced: 15 May 2025
https://github.com/pblischak/bann_spdelim
Python scripts for processing B. annulata ddRADseq data
Last synced: 15 May 2025
https://github.com/pblischak/fluidigm2purc-docker
Docker image for automated build of fluidigm2purc image
Last synced: 15 May 2025
https://github.com/pblischak/evolution2016
Evolution 2016 Presentation (Austin, TX)
Last synced: 15 May 2025
https://github.com/pblischak/trim_nds
Trim N's and ?'s from the ends of nucleotide sequences
Last synced: 15 May 2025