Projects in Awesome Lists tagged with boolean-networks
A curated list of projects in awesome lists tagged with boolean-networks .
https://github.com/bnediction/bonesis
Synthesis and Reprogramming of Most Permissive Boolean Networks
answer-set-programming boolean-networks synthesis systems-biology
Last synced: 09 Jul 2025
https://github.com/bnediction/scboolseq
scBoolSeq: scRNA-Seq data binarisation and synthetic generation from Boolean dynamics
bioinformatics boolean-networks computational-biology machine-learning pandas python3 scikit-learn scrna-seq single-cell-rna-seq
Last synced: 09 Mar 2026
https://github.com/jcrozum/biobalm
The biologist's Boolean attractor landscape mapper, building Waddington landscapes from Boolean networks.
answer-set-programming attractors biology boolean-networks control-theory discrete-dynamics feedback-vertex-set network-science petri-nets systems-biology waddington-landscape
Last synced: 22 Sep 2025
https://github.com/bnediction/bonesistools
Python package providing bioinformatics tools for upstream and downstream analysis of the BoNesis framework
anndata atacseq bioinformatics boolean-networks gene-regulatory-networks mudata python rnaseq single-cell systems-biology
Last synced: 12 Jun 2026
https://github.com/pauleve/updating-modes-notebooks
Notebooks demonstrating colomoto.minibn for computing dynamics of Boolean networks with various update modes
Last synced: 29 Jul 2025
https://github.com/bnediction/reprogramming-with-bonesis
Executable paper and data demonstrating marker reprogramming of Boolean networks with BoNesis
answer-set-programming attractors boolean-networks control minimal-trap-spaces most-permissive reprogramming
Last synced: 19 Mar 2026