Projects in Awesome Lists tagged with calcium-imaging
A curated list of projects in awesome lists tagged with calcium-imaging .
https://github.com/flatironinstitute/CaImAn
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
2-photon calcium-imaging cnmf deconvolution motion-correction source-extraction
Last synced: 06 May 2025
https://github.com/flatironinstitute/caiman
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
2-photon calcium-imaging cnmf deconvolution motion-correction source-extraction
Last synced: 14 May 2025
https://github.com/flatironinstitute/caiman-matlab
Complete Matlab pipeline for large scale calcium imaging data analysis
calcium-imaging matlab roi-segmentation source-extraction spike spike-deconvolution spike-inference
Last synced: 05 Apr 2025
https://github.com/flatironinstitute/normcorre
Matlab routines for online non-rigid motion correction of calcium imaging data
algorithm calcium-imaging matlab motion-correction registration subpixel-registration
Last synced: 19 Dec 2024
https://github.com/alleninstitute/neuroglia
a Python machine learning library for neurophysiology data
calcium-imaging electrophysiology machine-learning neurophysiology neuroscience nwb open-science python scikit-learn
Last synced: 10 Apr 2025
https://github.com/alexklibisz/deep-calcium
Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks (https://arxiv.org/abs/1707.06314)
calcium-imaging deep-learning neurofinder unet
Last synced: 21 Mar 2025
https://github.com/samuroi/samuroi
SamuROI - Structured analysis of multiple user-defined ROIs, an open source Python-based analysis environment for imaging data.
calcium-imaging conda data-analysis data-visualization opencv python scikit-image
Last synced: 15 Apr 2025
https://github.com/csinva/neural-spike-sorting
Experimental code for performing spike sorting using a neural network.
calcium-imaging convolutional-neural-networks
Last synced: 02 Apr 2025
https://github.com/bryanlimy/calciumgan
Synthesising Realistic Calcium Imaging Data of Neuronal Populations Using GAN.
calcium-imaging calcium-signals gan spike-analysis spike-trains
Last synced: 26 Mar 2025
https://github.com/csinva/mouse-brain-decoding
Decoding images from calcium recordings using data from stringer et al. 2018.
ai artificial-intelligence calcium-imaging computer-vision decoding gan machine-learning ml neural-network neuroscience python pytorch vision
Last synced: 02 Apr 2025
https://github.com/bryanlimy/spikes2calcium
A simple Python tool to convert spike trains to calcium fluorescence-like traces.
Last synced: 04 Apr 2025
https://github.com/dilawar/jugnoo
ROI locatior in imaging data.
calcium-imaging imaging-informatics roi
Last synced: 23 Feb 2025
https://github.com/lauraluebbert/thorimage-sync_2p-analysis
Notebook to analyze ThorImage + ThorSync 2-photon data with light stimulation.
2-photon calcium-imaging image-processing thorimage thorsync
Last synced: 27 Mar 2025
